Commit Graph

72 Commits

Author SHA1 Message Date
2091ad85f0 LATEST WORKING VERSION (More bugfixes) 2025-08-30 15:20:09 +02:00
51fe2331bc LATEST VALIDATED VERSION (With minor cosmetic changes) 2025-08-30 12:26:33 +02:00
40b6a6b66d More bugfixes 2025-08-30 12:00:46 +02:00
9e03632b4f Major bugfixes 2025-08-30 03:01:00 +02:00
369a0da75d More bugfixes 2025-08-29 20:52:41 +02:00
Karthik
7d196f4bb0 Bugfixes and updates to save functionality. 2025-08-29 20:16:13 +02:00
Karthik
93210fb5e6 Major update and bugfixes to compute, collect OD images. 2025-08-29 15:47:01 +02:00
Karthik
e64665af39 MAJOR update: Added functionality to handle pre-computed OD images in a separate location and plot images or run analysis on it. 2025-08-28 16:19:13 +02:00
cf577bfcde Cosmetic changes. 2025-08-27 23:44:29 +02:00
90f7d2b520 Bugfixes 2025-08-27 21:30:03 +02:00
4971e488c4 MAJOR update to how raw data is handled - saves full od images to disk if it detects computer does not have enough RAM and allows for quick post-processing. 2025-08-27 19:17:09 +02:00
fb12be8e22 Added plotting of PCA results across scripts, minor cosmetic changes and bugfixes. 2025-08-25 22:29:02 +02:00
3c407617a0 Missed adding the plotting routine for the PCA results in last commit 2025-08-24 20:46:20 +02:00
cd96f83fb6 Latest fully functional script - added complete PCA functionality - computes the PCA results and packs in to results struct, included plotting functionality of the PCA results in addition. 2025-08-24 20:41:17 +02:00
c9ed8be2f2 Modified PDF plotting to allow for plotting true histogram with and without normalization as default, with KDE as a choice. Modified function calls accordingly. 2025-08-24 14:30:38 +02:00
ebd31a91fb Fully validated code - droplets to stripes analysis across multiple folders completed successfully. 2D analysis, PCA and lattice reconstruction remain to be implemented. 2025-08-24 10:04:37 +02:00
bc1c3e287a Minor bugfixes from last commit. 2025-08-23 21:23:33 +02:00
2abbefb3a7 Added safeguards against out-of-memory errors by prior estimation of required RAM - still needs an alternative method to read and analyse datasets too large to load in to memory. 2025-08-23 21:11:42 +02:00
ae9af32eda Latest complete update to scripts to save data and figures. 2025-08-23 19:53:58 +02:00
db298413d1 Modified to save analysis data that once done does not need to be redone if it needs to be plotted again or differently. 2025-08-23 18:30:07 +02:00
628a29971f Adjusted parameters for analysis. 2025-08-20 17:48:05 +02:00
dc360ed659 Added more verbose text to display in console, new scripts to analyse Stripe to Droplet transition. 2025-08-20 12:31:15 +02:00
b0f45aa7e6 Bugfixes, general improvements. 2025-08-19 12:28:58 +02:00
33573b5810 Another bugfix that prevented the saving of OD images. 2025-08-19 01:15:50 +02:00
5ff4cbbc2d Bug fixes, exception handling, new measurement analysis scripts. 2025-08-19 00:52:59 +02:00
1a99ff2c2a Change in magnification, added scripts to analyse BEC to Droplets dataset. 2025-08-18 16:12:49 +02:00
1f7526c594 Modifications in batch analysis script to take sequence name, date and run number, to reuse data saved in workspace and enhancements to image viewer. 2025-08-18 16:03:25 +02:00
f52666d929 Previous standalone version of data analysis routines added as part of legacy code archive. 2025-08-18 10:29:17 +02:00
3115554b27 MAJOR restructuring of Data-Analyzer: code re-written to be highly modular. 2025-08-18 10:24:55 +02:00
be84ba8bd5 Revert "MAJOR restructuring: Code rewritten to be highly modular."
This reverts commit f61ab4deff.
2025-08-18 00:27:27 +02:00
f61ab4deff MAJOR restructuring: Code rewritten to be highly modular. 2025-08-18 00:14:18 +02:00
ea9b40793f Revert "MAJOR restructuring: code rewritten to be highly modular."
This reverts commit 9011919780.
2025-08-18 00:10:17 +02:00
9011919780 MAJOR restructuring: code rewritten to be highly modular. 2025-08-17 23:40:06 +02:00
3519f0de82 MAJOR restructuring: code now rewritten to be highly modular. 2025-08-17 23:37:38 +02:00
ea14ccddf4 Latest script to carry out PCA on experimental dataset 2025-08-14 17:54:47 +02:00
832431bac5 Latest analysis scripts 2025-08-12 20:07:50 +02:00
e3571c12b0 Modified PCA analysis script to run on simulated data. 2025-08-11 15:23:16 +02:00
Karthik
1d178a3d75 Test script for analysing experimental data with PCA - requires further development. 2025-08-11 12:35:02 +02:00
Karthik
24392f2e35 Corrected code to more accurately depict the distribution of the order parameter 2025-08-08 00:15:36 +02:00
4a4ddf0e9c New script added to better understand cumulants. 2025-08-07 19:00:23 +02:00
304758bebe Added new routine to simulate distribution of data and compute its cumulants, additionally made minor modifications to experimental data analysis routines. 2025-08-06 19:06:02 +02:00
b91dba7165 New routines to compute PDF, cumulants of order parameter 2025-07-31 20:28:08 +02:00
7a6c3f9197 Updated script to compute with the new full g2, max g2 definitions for simulation results. 2025-07-21 17:35:20 +02:00
f6981b9233 New routine to plot insitu images across runs, new script to calculate interference pattern, potential for an optical accordion lattice. 2025-07-18 22:10:05 +02:00
64229ecd69 Folder restructuring 2025-07-11 16:34:40 +02:00
96c0a50beb Changes to analyze datasets 2025-07-11 16:33:03 +02:00
25e3bade5e Added heatmap plots of the different quantities 2025-07-11 01:07:26 +02:00
195e65ec5f MAJOR update - many changes! 2025-07-10 23:49:03 +02:00
6b4dd299f5 Aesthetic changes 2025-07-08 17:15:41 +02:00
39aa2072cf Added new script to extract correlation only in a window, modified autocorrelation script with new definition of g2 and with unnormalized angular spectral distribution 2025-07-08 16:50:15 +02:00