Karthik Chandrashekara c8218c1bc4 Major change how the loading rate is calculated from the raw output of the simulator - Zero crossing of the autocorrelation of the time series - which is the number of loaded atoms at each time step - is used to determine the length of each of a 1000 bootstrap samples obtained by sampling with replacement. Mean in each sample is calculated and a sampling distribution of means obtained. The capture ratio is the mean of this distribution which when multiplied by the "reduced" flux gives the loading rate. Standard Error and 95% confidence interval are also calculated from the sampling distribution.		2021-07-11 06:22:44 +02:00
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accelerationDueToPushBeam.m	Corrected errors in the formula for the acceleration due to the push beam.	2021-07-11 06:13:49 +02:00
accelerationDueToSpontaneousEmissionProcess.m	Cosmetic changes like the change of variable names to reflect their correct definition and use.	2021-07-11 06:15:02 +02:00
angularDistributionFunction.m	No major change.	2021-07-11 06:15:49 +02:00
bootstrapErrorEstimation.m	Major change how the loading rate is calculated from the raw output of the simulator - Zero crossing of the autocorrelation of the time series - which is the number of loaded atoms at each time step - is used to determine the length of each of a 1000 bootstrap samples obtained by sampling with replacement. Mean in each sample is calculated and a sampling distribution of means obtained. The capture ratio is the mean of this distribution which when multiplied by the "reduced" flux gives the loading rate. Standard Error and 95% confidence interval are also calculated from the sampling distribution.	2021-07-11 06:22:44 +02:00
calculateCaptureVelocity.m	Added a switch to change between 2D and 3D MOT cases to allow for this code to be expanded and generalized in the future.	2021-07-11 06:18:21 +02:00
calculateFreeMolecularRegimeFlux.m	Added new plotting routines that allow for checks, minor cosmetic changes to other scripts.	2021-07-03 10:19:27 +02:00
calculateLoadingRate.m	More cosmetic changes, corrections to some calculations like the one of flux, re-wrote how one and two parameter scans are done with functions, added a save option to save the entire simulator object with its properties and their values along with the results.	2021-07-04 20:24:38 +02:00
calculateLocalSaturationIntensity.m	More cosmetic changes, corrections to some calculations like the one of flux, re-wrote how one and two parameter scans are done with functions, added a save option to save the entire simulator object with its properties and their values along with the results.	2021-07-04 20:24:38 +02:00
calculateTotalAcceleration.m	Added new plotting routines that allow for checks, minor cosmetic changes to other scripts.	2021-07-03 10:19:27 +02:00
doOneParameterScan.m	More cosmetic changes, corrections to some calculations like the one of flux, re-wrote how one and two parameter scans are done with functions, added a save option to save the entire simulator object with its properties and their values along with the results.	2021-07-04 20:24:38 +02:00
doTwoParameterScan.m	More cosmetic changes, corrections to some calculations like the one of flux, re-wrote how one and two parameter scans are done with functions, added a save option to save the entire simulator object with its properties and their values along with the results.	2021-07-04 20:24:38 +02:00
initialPositionSampling.m	This is a class for simulating the capture process for Dy atoms in the 2-D and 3-D MOTs, including the dynamics from the push beam and slower beams.	2021-06-29 15:44:28 +02:00
initialVelocitySampling.m	Added new plotting routines that allow for checks, minor cosmetic changes to other scripts.	2021-07-03 10:19:27 +02:00
magneticFieldForMOT.m	This is a class for simulating the capture process for Dy atoms in the 2-D and 3-D MOTs, including the dynamics from the push beam and slower beams.	2021-06-29 15:44:28 +02:00
MOTSimulator.m	More cosmetic changes, corrections to some calculations like the one of flux, re-wrote how one and two parameter scans are done with functions, added a save option to save the entire simulator object with its properties and their values along with the results.	2021-07-04 20:24:38 +02:00
reinitializeSimulator.m	Added new plotting routines that allow for checks, minor cosmetic changes to other scripts.	2021-07-03 10:19:27 +02:00
runSimulation.m	More cosmetic changes, corrections to some calculations like the one of flux, re-wrote how one and two parameter scans are done with functions, added a save option to save the entire simulator object with its properties and their values along with the results.	2021-07-04 20:24:38 +02:00
setInitialConditions.m	More cosmetic changes, corrections to some calculations like the one of flux, re-wrote how one and two parameter scans are done with functions, added a save option to save the entire simulator object with its properties and their values along with the results.	2021-07-04 20:24:38 +02:00
solver.m	Added new plotting routines that allow for checks, minor cosmetic changes to other scripts.	2021-07-03 10:19:27 +02:00
velocityDistributionFunction.m	This is a class for simulating the capture process for Dy atoms in the 2-D and 3-D MOTs, including the dynamics from the push beam and slower beams.	2021-06-29 15:44:28 +02:00