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1503 lines
55 KiB
1503 lines
55 KiB
/// to do:
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/// 1. correct for gap between arrays
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#define convert_cxx
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#include "hitutils.h"
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#include <string>
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#include <stdio.h>
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#include <iostream>
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#include <vector>
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#include <utility>
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#include <TH2.h>
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#include <TF1.h>
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#include <TStyle.h>
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#include <TCanvas.h>
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#include <TFile.h>
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#include <TTree.h>
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#include <TSystemDirectory.h>
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#include <gsl/gsl_statistics.h>
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#include <math.h>
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#include <gsl/gsl_errno.h>
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#include <gsl/gsl_fft_complex.h>
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#include <TF1.h>
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#include <TGraphErrors.h>
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#include <gsl/gsl_sort.h>
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#include <TVector.h>
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#include "TStopwatch.h"
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#include "Math/MinimizerOptions.h"
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#include "TVirtualFitter.h"
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#include "TMatrixD.h"
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//using namespace std;
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bool smooth_on = true;
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bool doFit = false;
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bool doLinInt = true;
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bool ethercat = true;
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Double_t S[128], T[128], SumT, SumS, SumS2, SumST, SumT2, SumY, SumYS, SumYT, sigmaABC, muABC,p,c, b, b_den, b_num, SumYYP, SumYYM, MeanY;
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TMatrixD M1(3,3);
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TMatrixD M1inv(3,3);
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TVectorD ABC(3);
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TVectorD M2(3);
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Double_t M1elements_b0[9] = {0.};
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Double_t M1elements_b1[9] = {0.};
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Double_t M1elements_b2[9] = {0.};
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Double_t M1elements_b3[9] = {0.};
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TMatrixD matrix(2,2);
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TMatrixD *M1pointer = &M1;
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TVectorD *M2pointer = &M2;
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TVectorD *ABCpointer = &ABC;
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int eventID = 0;
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int framestart=0;
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int frameend = 0;
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double board_b0_ch[128];
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double board_b1_ch[128];
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double board_b2_ch[128];
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double board_b3_ch[128];
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double board_b0_ch_bkg[128];
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double board_b1_ch_bkg[128];
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double board_b2_ch_bkg[128];
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double board_b3_ch_bkg[128];
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double signal_b0 = 0.;
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double signal_b1 = 0.;
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double signal_b2 = 0.;
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double signal_b3 = 0.;
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double signal_cor_b0 = 0.;
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double signal_cor_b1 = 0.;
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double signal_cor_b2 = 0.;
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double signal_cor_b3 = 0.;
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double signal_b0_left = 0.;
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double signal_b1_left = 0.;
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double signal_b2_left = 0.;
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double signal_b3_left = 0.;
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double signal_b0_right = 0.;
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double signal_b1_right = 0.;
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double signal_b2_right = 0.;
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double signal_b3_right = 0.;
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double signal_gsl_b0[128];
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double signal_gsl_b1[128];
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double signal_gsl_b2[128];
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double signal_gsl_b3[128];
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double signal_reg[128];
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double channellist_gsl_b0[128];
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double channellist_gsl_b1[128];
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double channellist_gsl_b2[128];
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double channellist_gsl_b3[128];
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double channellist[128];
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double channellist_reg[128];
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double pos[128];
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double maxchannelamp_b0 =0.;
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double maxchannelamp_b1 =0.;
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double maxchannelamp_b2 =0.;
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double maxchannelamp_b3 =0.;
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int maxchannel_b0 =0;
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int maxchannel_b1 =0;
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int maxchannel_b2 =0;
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int maxchannel_b3 =0;
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int numtocalc_b0 =0;
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int numtocalc_b1 =0;
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int numtocalc_b2 =0;
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int numtocalc_b3 =0;
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int numtocalc_reg =0;
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int nfwhm_b0 = 0;
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int nfwhm_b1 = 0;
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int nfwhm_b2 = 0;
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int nfwhm_b3 = 0;
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double beamPosX_b0,beamPosX_b1,beamPosX_b2,beamPosX_b3;
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double beamFocusX_b0,beamFocusX_b1,beamFocusX_b2,beamFocusX_b3;
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double beamPosX_fit_b0,beamPosX_fit_b1,beamPosX_fit_b2,beamPosX_fit_b3;
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double beamFocusX_fit_b0,beamFocusX_fit_b1,beamFocusX_fit_b2,beamFocusX_fit_b3;
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double beamSkewX_b0,beamSkewX_b1,beamSkewX_b2,beamSkewX_b3;
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double beamKurtX_b0,beamKurtX_b1,beamKurtX_b2,beamKurtX_b3;
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int beamNumX_b0,beamNumX_b1,beamNumX_b2,beamNumX_b3;
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double beamRsqr_b0,beamRsqr_b1,beamRsqr_b2,beamRsqr_b3;
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double beamChi2_fit_b0,beamChi2_fit_b1,beamChi2_fit_b2,beamChi2_fit_b3;
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double beamPosX_reg_b0,beamPosX_reg_b1,beamPosX_reg_b2,beamPosX_reg_b3;
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double beamFocusX_reg_b0,beamFocusX_reg_b1,beamFocusX_reg_b2,beamFocusX_reg_b3;
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double beamPeakX_reg_b0,beamPeakX_reg_b1,beamPeakX_reg_b2,beamPeakX_reg_b3;
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double beamSidebandNoise_b0, beamSidebandNoise_b1, beamSidebandNoise_b2, beamSidebandNoise_b3 ;
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int sidenumtocalc_b0,sidenumtocalc_b1,sidenumtocalc_b2,sidenumtocalc_b3;
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size_t size = 5;
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const int length = 100; //length of the rolling average
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double array_b0[length] = {0.};
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double array_b1[length] = {0.};
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double array_b2[length] = {0.};
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double array_b3[length] = {0.};
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double arrayavg_b0 = 0.;
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double arrayavg_b1 = 0.;
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double arrayavg_b2 = 0.;
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double arrayavg_b3 = 0.;
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bool graphsaved_b0 = false;
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bool graphsaved_b1 = false;
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bool graphsaved_b2 = false;
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bool graphsaved_b3 = false;
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TVector beamontime(0,3,0.,0.,0.,0.,"END");
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TVector * beamontime_ptr = &beamontime;
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double calibration_b0[128] = {0.};
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double calibration_b1[128] = {0.};
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double calibration_b2[128] = {0.};
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double calibration_b3[128] = {0.};
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TF1 * gausfunc_b0 = new TF1("gausfunc_b0","gaus(0)+[3]");
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TF1 * gausfunc_b1 = new TF1("gausfunc_b1","gaus(0)+[3]");
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TGraphErrors * gausgraph_b0;
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TGraphErrors * gausgraph_b1;
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Int_t lastfit_b0 = 0;
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Int_t lastfit_b1 = 0;
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double errorx[128];
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double errory[128];
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bool samplenoise = false;
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bool beam_off = true;
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bool beam_wason = false;
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int beamoffcounter = 0;
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int beamoncounter = 0;
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Double_t mybeta = 0.;
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Double_t lorentz_gamma = 0.;
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Double_t zsqr = 0.;
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Double_t sp_air = 0.;
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Double_t sp_ps = 0.;
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Double_t sp2_air = 0.;
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Double_t sp2_ps = 0.;
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Double_t intcorr = 1.;
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Double_t x, q, median;
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TF1 * f_sp_air = new TF1("f_sp_air","[0]*pow(x,[1])+[2]", 50, 250); //stopping power of protons in Air [MeV cm2 /g]
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TF1 * f_sp_ps = new TF1("f_sp_ps","[0]*pow(x,[1])+[2]", 50, 250); //stopping power of protons in polystyrene [MeV cm2 /g]
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TF1 * f_h2sp_air = new TF1("f_h2sp_air","[0]*pow(x,[1])+[2]", 50, 250); //stopping power of helium in air [MeV cm2 /g]
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TF1 * f_h2sp_ps = new TF1("f_h2sp_ps","[0]*pow(x,[1])+[2]", 50, 250); //stopping power of helium in polystyrene [MeV cm2 /g]
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TF1 * f_c12sp_air = new TF1("f_c12sp_air","[0]*pow(x,[1])+[2]", 80, 480); //stopping power of carbon in air [MeV cm2 /g]
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TF1 * f_c12sp_ps = new TF1("f_c12sp_ps","[0]*pow(x,[1])+[2]", 80, 480); //stopping power of carbon in polystyrene [MeV cm2 /g]
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TF1 * f_o16sp_air = new TF1("f_o16sp_air","[0]*pow(x,[1])+[2]", 80, 480); //stopping power of oxygen in air [MeV cm2 /g]
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TF1 * f_o16sp_ps = new TF1("f_o16sp_ps","[0]*pow(x,[1])+[2]", 80,480); //stopping power of oxygen in polystyrene [MeV cm2 /g]
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///// ic1/SP intensity correction factor = 19.8E6+/-0.1E6 particles/s per nA/(Mevcm2/g)
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/// compile with:
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//// $ make clean; make
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/// run with:
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//// $ ./convert <path to data> <run>
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//// $ ./convert /work/leverington/beamprofilemonitor/hitdata/HIT_17_12_2017/ run2
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int analyse(int argc, char **argv)
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{
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f_sp_air->SetParameters(303.746, -0.873697,1.01335); //protons between 50 and 300 MeV
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f_sp_ps->SetParameters(361.936, -0.892255, 1.19133); //protons between 50 and 220 MeV
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f_h2sp_air->SetParameters(1236.51, -0.880225, 4.17041); //helium between 50 and 300 MeV
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f_h2sp_ps->SetParameters(1387.08, -0.882686,4.60833); //heelium between 50 and 300 MeV
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f_c12sp_air->SetParameters(13291.2, -0.925464,45.3876); //carbon between 80 and 480 MeV
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f_c12sp_ps->SetParameters(14538.9, -0.922423,49.2859); //carbon between 80 and 480 MeV
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f_o16sp_air->SetParameters(24624.9, -0.925425,80.6828); //oxygen between 80 and 480 MeV
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f_o16sp_ps->SetParameters(26465.6, -0.928309,88.6728); //oxygen between 80 and 480 MeV
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// TVirtualFitter::SetDefaultFitter("Minuit2");
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// TVirtualFitter::SetPrecision(0.1);
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// std::cout << "Default Fitter:" << TVirtualFitter::GetDefaultFitter() << std::endl;
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//initialise some values;
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for (int i = 0;i<128;i++){
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board_b0_ch_bkg[i] = 0.;
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board_b1_ch_bkg[i] = 0.;
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board_b2_ch_bkg[i] = 0.;
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board_b3_ch_bkg[i] = 0.;
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channellist_gsl_b0[i] = 0;
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channellist_gsl_b1[i] = 0;
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channellist_gsl_b2[i] = 0;
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channellist_gsl_b3[i] = 0;
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calibration_b0[i] = 1.0;
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calibration_b1[i] = 1.0;
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calibration_b2[i] = 1.0;
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calibration_b3[i] = 1.0;
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errorx[i]=17.;
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errory[i]=17.;
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if (i<64) {pos[i] = double(i);}
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else {pos[i] = double(i) + 0.2; }
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}
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if (argc > 1){
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//open the file names specified in the command line
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char * ethercatfile = argv[3];
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// argv[1]= "/work/leverington/beamprofilemonitor/hitdata/HIT_17_12_2017/";
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// argv[2]= "Run11"
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char * filename = Form("%s%s.dat",argv[1],argv[2]);
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char * timestampfilename = Form("%s%s_timestamp.csv",argv[1],argv[2]);
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char * rootfilename = Form("%s/root/%s.root",argv[1],argv[2]);
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ifstream file(filename, ifstream::in | ifstream::binary);
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ifstream timestampfile(timestampfilename, ifstream::in);
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if (!file.is_open()){
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printf(".dat did not open.\n");
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return -1; //file could not be opened
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}
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if (!timestampfile.is_open()){
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printf("timestamp.csv did not open.\n");
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ethercat = false;
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//return -1; //file could not be opened
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}
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///some variables to get the data
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// int number_of_records_to_read = 4*10;
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// BufferData* buffer = new BufferData[number_of_records_to_read];
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//if(argc > 4) {
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// framestart = atoi(argv[3]);
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// frameend = atoi(argv[4]);
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// }
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int board_b = -1;
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long int fileframesize = getFileSize(filename) / ( 4*sizeof(BufferData) );
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BufferData* dataptr = new BufferData();
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if (fileframesize>0){
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std::cout << "Number of frames:" << fileframesize << std::endl;
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//open ROOT file for saving histos and TTree.
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TFile *rootFile = new TFile(rootfilename,"RECREATE");
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if ( rootFile->IsOpen() ) printf("ROOT file opened successfully\n");
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TH2D * th2_signal_vs_channel_b0 = new TH2D("th2_signal_vs_channel_b0","th2_signal_vs_channel_b0",128,0,128,2200,-1000,10000);
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TH2D * th2_signal_vs_channel_b1 = new TH2D("th2_signal_vs_channel_b1","th2_signal_vs_channel_b1",128,0,128,2200,-1000,10000);
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TH2D * th2_signal_vs_channel_b2 = new TH2D("th2_signal_vs_channel_b2","th2_signal_vs_channel_b2",128,0,128,2200,-1000,10000);
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TH2D * th2_signal_vs_channel_b3 = new TH2D("th2_signal_vs_channel_b3","th2_signal_vs_channel_b3",128,0,128,2200,-1000,10000);
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TH2D * th2_signal_vs_channel_sub_b0 = new TH2D("th2_signal_vs_channel_sub_b0","th2_signal_vs_channel_sub_b0",128,0,128,2200,-1000,10000);
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TH2D * th2_signal_vs_channel_sub_b1 = new TH2D("th2_signal_vs_channel_sub_b1","th2_signal_vs_channel_sub_b1",128,0,128,2200,-1000,10000);
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TH2D * th2_signal_vs_channel_sub_b2 = new TH2D("th2_signal_vs_channel_sub_b2","th2_signal_vs_channel_sub_b2",128,0,128,2200,-1000,10000);
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TH2D * th2_signal_vs_channel_sub_b3 = new TH2D("th2_signal_vs_channel_sub_b3","th2_signal_vs_channel_sub_b3",128,0,128,2200,-1000,10000);
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TH1D * th1_signal_b0 = new TH1D("th1_signal_b0","th1_signal_b0",2200,-10000,50000);
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TH1D * th1_signal_b1 = new TH1D("th1_signal_b1","th1_signal_b1",2200,-10000,50000);
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TH1D * th1_signal_b2 = new TH1D("th1_signal_b2","th1_signal_b2",2200,-10000,50000);
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TH1D * th1_signal_b3 = new TH1D("th1_signal_b3","th1_signal_b3",2200,-10000,50000);
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TH1D * h_regresidual_b0 = new TH1D("h_regresidual_b0","h_regresidual_b0", 200,-.20,.20);
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TH1D * h_regresidual_b1 = new TH1D("h_regresidual_b1","h_regresidual_b1", 200,-.20,.20);
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TH1D * h_regresidual_b2 = new TH1D("h_regresidual_b2","h_regresidual_b2", 200,-.20,.20);
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TH1D * h_regresidual_b3 = new TH1D("h_regresidual_b3","h_regresidual_b3", 200,-.20,.20);
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TGraph * graph_bkg_b0 = new TGraph();
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TGraph * graph_bkg_b1 = new TGraph();
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TGraph * graph_bkg_b2 = new TGraph();
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TGraph * graph_bkg_b3 = new TGraph();
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TGraph * gr_b0;
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TGraph * gr_sm_b0;
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TGraph * gr_b1;
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TGraph * gr_sm_b1;
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TGraph * gr_b2;
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TGraph * gr_sm_b2;
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TGraph * gr_b3;
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TGraph * gr_sm_b3;
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TH2D * th2_signal_vs_channel_bkg_b0 = new TH2D("th2_signal_vs_channel_bkg_b0","th2_signal_vs_channel_bkg_b0",128,0,128,1000,-500,500);
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TH2D * th2_signal_vs_channel_bkg_b1 = new TH2D("th2_signal_vs_channel_bkg_b1","th2_signal_vs_channel_bkg_b1",128,0,128,1000,-500,500);
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TH2D * th2_signal_vs_channel_bkg_b2 = new TH2D("th2_signal_vs_channel_bkg_b2","th2_signal_vs_channel_bkg_b2",128,0,128,1000,-500,500);
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TH2D * th2_signal_vs_channel_bkg_b3 = new TH2D("th2_signal_vs_channel_bkg_b3","th2_signal_vs_channel_bkg_b3",128,0,128,1000,-500,500);
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TH2D * th2_resid_vs_channel_bkg_b0 = new TH2D("th2_resid_vs_channel_bkg_b0","th2_resid_vs_channel_bkg_b0",128,0,128,300,-.15,.15);
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TH2D * th2_resid_vs_channel_bkg_b1 = new TH2D("th2_resid_vs_channel_bkg_b1","th2_resid_vs_channel_bkg_b1",128,0,128,300,-.15,.15);
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TH2D * th2_resid_vs_channel_bkg_b2 = new TH2D("th2_resid_vs_channel_bkg_b2","th2_resid_vs_channel_bkg_b2",128,0,128,300,-.15,.15);
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TH2D * th2_resid_vs_channel_bkg_b3 = new TH2D("th2_resid_vs_channel_bkg_b3","th2_resid_vs_channel_bkg_b3",128,0,128,300,-.15,.15);
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TH1D* h_beamSignal_b0[30];
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TH1D* h_beamSignal_b1[30];
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TH1D* h_beamSignal_b2[30];
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TH1D* h_beamSignal_b3[30];
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int energy_indexbin = 0;
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char histname[30] = "";
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TH1D* h_beamSignal_ic1[30];
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TH1D* h_beamSignal_cor_b0[30];
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TH1D* h_beamSignal_cor_b1[30];
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TH1D* h_beamSignal_cor_b2[30];
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TH1D* h_beamSignal_cor_b3[30];
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Double_t beamSignal_cor_b0_mean[30];
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Double_t beamSignal_cor_b1_mean[30];
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Double_t beamSignal_cor_b2_mean[30];
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Double_t beamSignal_cor_b3_mean[30];
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Double_t mybeta_graph[30];
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for (int iii=0; iii<=29; iii++){
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sprintf(histname,"h_beamSignal_b0_%d",iii);
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h_beamSignal_b0[iii] = new TH1D(histname,histname,200,0,100000);
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sprintf(histname,"h_beamSignal_b1_%d",iii);
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h_beamSignal_b1[iii] = new TH1D(histname,histname,200,0,100000);
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sprintf(histname,"h_beamSignal_b2_%d",iii);
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h_beamSignal_b2[iii] = new TH1D(histname,histname,200,0,100000);
|
|
sprintf(histname,"h_beamSignal_b3_%d",iii);
|
|
h_beamSignal_b3[iii] = new TH1D(histname,histname,200,0,100000);
|
|
}
|
|
for (int iii=0; iii<=29; iii++){
|
|
sprintf(histname,"h_beamSignal_cor_b0_%d",iii);
|
|
h_beamSignal_cor_b0[iii] = new TH1D(histname,histname,200,0,10);
|
|
sprintf(histname,"h_beamSignal_cor_b1_%d",iii);
|
|
h_beamSignal_cor_b1[iii] = new TH1D(histname,histname,200,0,10.);
|
|
sprintf(histname,"h_beamSignal_cor_b2_%d",iii);
|
|
h_beamSignal_cor_b2[iii] = new TH1D(histname,histname,200,0,10.);
|
|
sprintf(histname,"h_beamSignal_cor_b3_%d",iii);
|
|
h_beamSignal_cor_b3[iii] = new TH1D(histname,histname,200,0,10.);
|
|
sprintf(histname,"h_beamSignal_ic1_%d",iii);
|
|
h_beamSignal_ic1[iii] = new TH1D(histname,histname,200,0,1000.);
|
|
|
|
}
|
|
|
|
|
|
TTree *rootTree = new TTree("t","HIT Data Root Tree");
|
|
|
|
rootTree->Branch("beamPosX_reg_b0",&beamPosX_reg_b0,"beamPosX_reg_b0/D");
|
|
rootTree->Branch("beamPosX_reg_b1",&beamPosX_reg_b1,"beamPosX_reg_b1/D");
|
|
rootTree->Branch("beamPosX_reg_b2",&beamPosX_reg_b2,"beamPosX_reg_b2/D");
|
|
rootTree->Branch("beamPosX_reg_b3",&beamPosX_reg_b3,"beamPosX_reg_b3/D");
|
|
|
|
|
|
rootTree->Branch("beamFocusX_reg_b0",&beamFocusX_reg_b0,"beamFocusX_reg_b0/D");
|
|
rootTree->Branch("beamFocusX_reg_b1",&beamFocusX_reg_b1,"beamFocusX_reg_b1/D");
|
|
rootTree->Branch("beamFocusX_reg_b2",&beamFocusX_reg_b2,"beamFocusX_reg_b2/D");
|
|
rootTree->Branch("beamFocusX_reg_b3",&beamFocusX_reg_b3,"beamFocusX_reg_b3/D");
|
|
|
|
rootTree->Branch("beamPeakX_reg_b0",&beamPeakX_reg_b0,"beamPeakX_reg_b0/D");
|
|
rootTree->Branch("beamPeakX_reg_b1",&beamPeakX_reg_b1,"beamPeakX_reg_b1/D");
|
|
rootTree->Branch("beamPeakX_reg_b2",&beamPeakX_reg_b2,"beamPeakX_reg_b2/D");
|
|
rootTree->Branch("beamPeakX_reg_b3",&beamPeakX_reg_b3,"beamPeakX_reg_b3/D");
|
|
|
|
|
|
rootTree->Branch("beamRsqr_b0",&beamRsqr_b0,"beamRsqr_b0/D");
|
|
rootTree->Branch("beamRsqr_b1",&beamRsqr_b1,"beamRsqr_b1/D");
|
|
rootTree->Branch("beamRsqr_b2",&beamRsqr_b2,"beamRsqr_b2/D");
|
|
rootTree->Branch("beamRsqr_b3",&beamRsqr_b3,"beamRsqr_b3/D");
|
|
rootTree->Branch("sp2_ps",&sp2_ps,"sp2_ps/D");
|
|
rootTree->Branch("sp2_air",&sp2_air,"sp2_air/D");
|
|
rootTree->Branch("mybeta",&mybeta,"mybeta/D");
|
|
|
|
|
|
rootTree->Branch("beamSkewX_b0",&beamSkewX_b0,"beamSkewX_b0/D");
|
|
rootTree->Branch("beamSkewX_b1",&beamSkewX_b1,"beamSkewX_b1/D");
|
|
rootTree->Branch("beamSkewX_b2",&beamSkewX_b2,"beamSkewX_b2/D");
|
|
rootTree->Branch("beamSkewX_b3",&beamSkewX_b3,"beamSkewX_b3/D");
|
|
rootTree->Branch("beamKurtX_b0",&beamKurtX_b0,"beamKurtX_b0/D");
|
|
rootTree->Branch("beamKurtX_b1",&beamKurtX_b1,"beamKurtX_b1/D");
|
|
rootTree->Branch("beamKurtX_b2",&beamKurtX_b2,"beamKurtX_b2/D");
|
|
rootTree->Branch("beamKurtX_b3",&beamKurtX_b3,"beamKurtX_b3/D");
|
|
rootTree->Branch("beamNumX_b0",&numtocalc_b0,"beamNumX_b0/I");
|
|
rootTree->Branch("beamNumX_b1",&numtocalc_b1,"beamNumX_b1/I");
|
|
rootTree->Branch("beamNumX_b2",&numtocalc_b2,"beamNumX_b2/I");
|
|
rootTree->Branch("beamNumX_b3",&numtocalc_b3,"beamNumX_b3/I");
|
|
rootTree->Branch("beamSignal_b0",&signal_b0,"beamSignal_b0/D");
|
|
rootTree->Branch("beamSignal_b1",&signal_b1,"beamSignal_b1/D");
|
|
rootTree->Branch("beamSignal_b2",&signal_b2,"beamSignal_b2/D");
|
|
rootTree->Branch("beamSignal_b3",&signal_b3,"beamSignal_b3/D");
|
|
|
|
|
|
rootTree->Branch("beamSignal_cor_b0",&signal_cor_b0,"beamSignal_cor_b0/D");
|
|
rootTree->Branch("beamSignal_cor_b1",&signal_cor_b1,"beamSignal_cor_b1/D");
|
|
rootTree->Branch("beamSignal_cor_b2",&signal_cor_b2,"beamSignal_cor_b2/D");
|
|
rootTree->Branch("beamSignal_cor_b3",&signal_cor_b3,"beamSignal_cor_b3/D");
|
|
|
|
|
|
rootTree->Branch("eventID",&eventID,"eventID/I");
|
|
//rootTree->Branch("board_b0_ch",&board_b0_ch,"board_b0_ch[128]/D");
|
|
//rootTree->Branch("board_b1_ch",&board_b1_ch,"board_b1_ch[128]/D");
|
|
//rootTree->Branch("board_b2_ch",&board_b2_ch,"board_b2_ch[128]/D");
|
|
//rootTree->Branch("board_b3_ch",&board_b3_ch,"board_b3_ch[128]/D");
|
|
|
|
rootTree->Branch("arrayavg_b0",&arrayavg_b0,"arrayavg_b0/D");
|
|
rootTree->Branch("arrayavg_b1",&arrayavg_b1,"arrayavg_b1/D");
|
|
rootTree->Branch("arrayavg_b2",&arrayavg_b2,"arrayavg_b2/D");
|
|
rootTree->Branch("arrayavg_b3",&arrayavg_b3,"arrayavg_b3/D");
|
|
|
|
rootTree->Branch("M1elements_b0",&M1elements_b0,"M1elements_b0[9]/D");
|
|
rootTree->Branch("M1elements_b1",&M1elements_b1,"M1elements_b1[9]/D");
|
|
rootTree->Branch("M1elements_b2",&M1elements_b2,"M1elements_b2[9]/D");
|
|
rootTree->Branch("M1elements_b3",&M1elements_b3,"M1elements_b3[9]/D");
|
|
|
|
|
|
|
|
double time;
|
|
|
|
// import and align matching ethercat data
|
|
TTree *tree2 = new TTree("t2", "t2");
|
|
if(ethercat){
|
|
std::cout << " Loading Ethercat data." << std::endl;
|
|
tree2->ReadFile(ethercatfile, "RELTIME2/D:IC1/D:MW1_POSX/D:MW1_POSY/D:ANALOG_IN1/D:ENERGY_INDEX/D:INTENSITY_INDEX/D:ION-SORT/D:TIME2/D", '\t');
|
|
std::cout << "Ethercat data loaded." << std::endl;
|
|
tree2->Print();
|
|
}
|
|
int k = 0;
|
|
// int count = 0;
|
|
double ic1, ic2, mw1_focusx, mw1_focusy, mw2_focusx, mw2_focusy, mw1_posx, mw1_posy, mw2_posx, mw2_posy;
|
|
double ic1_avg, ic2_avg, mw1_focusx_avg, mw1_focusy_avg, mw2_focusx_avg, mw2_focusy_avg, mw1_posx_avg, mw1_posy_avg, mw2_posx_avg, mw2_posy_avg;
|
|
|
|
double analog_in1;
|
|
double energy_index;
|
|
double energy;
|
|
double energy_list_p[27] = {48.12, 59.82, 70.03, 79.17, 87.53, 95.3, 102.61, 109.56, 116.2, 122.57, 128.72, 134.65, 140.41, 146.01, 151.5, 156.89, 162.21, 167.46, 172.62, 177.7, 184.81, 191.87, 198.76, 205.48, 212.06, 218.51, 0.};
|
|
double energy_list_he[27] = {50.57, 61.86, 71.73, 80.64, 88.85, 96.52, 103.76, 110.64, 117.23, 123.55, 129.64, 135.55, 141.27, 146.84, 152.26, 157.56, 162.73, 167.8, 172.77, 177.64, 184.56, 191.54, 198.36, 205.03, 211.57, 217.98, 0.};
|
|
double energy_list_c[27] = {88.83,110.58,129.79,147.13,163.09,178.01,192.13,205.6,218.52,230.98,243.03,254.71,266.08,277.19,288.1,298.87,309.52,320.07,330.48,340.77,355.22,369.64,383.78,397.66,411.32,424.77,0.};
|
|
double energy_list_o[27] = {103.77, 129.65, 152.42, 172.98, 191.96, 209.63, 226.53, 242.58, 258.11, 273.04, 287.5, 301.55, 315.32, 328.61, 341.84, 354.88, 367.94, 380.48, 393.09, 405.65, 423.23, 440.82, 458.11, 475.28, 491.93, 508.38, 0.};
|
|
double intensity_index;
|
|
double intensity;
|
|
double intensity_list_p[16] = {0., 8.00E+07, 1.20E+08, 2.00E+08, 3.20E+08,4.00E+08, 6.00E+08, 8.00E+08, 1.20E+09, 2.00E+09, 3.20E+09, 4.00E+09, 6.00E+09, 8.00E+09, 1.20E+10, 2.00E+10};
|
|
double intensity_list_he[16] = { 0., 2.00E+07, 3.00E+07, 5.00E+07, 8.00E+07, 1.00E+08, 1.50E+08, 2.00E+08, 3.00E+08, 5.00E+08, 8.00E+08, 1.00E+09, 1.50E+09, 2.00E+09, 3.00E+09, 5.00E+09};
|
|
|
|
double intensity_list_c[16] = {0.,2.00E+06, 3.00E+06, 5.00E+06, 8.00E+06, 1.00E+07, 1.50E+07, 2.00E+07, 3.00E+07, 5.00E+07, 8.00E+07, 1.00E+08, 1.50E+08, 2.00E+08, 3.00E+08, 5.00E+08};
|
|
double intensity_list_o[16] = {0., 1.00E+06, 1.50E+06, 2.50E+06, 4.00E+06, 5.00E+06, 8.00E+06, 1.00E+07, 1.50E+07, 2.50E+07, 4.00E+07, 5.00E+07, 8.00E+07, 1.00E+08, 1.50E+08, 2.50E+08 };
|
|
double ionsort;
|
|
|
|
double rel_time2,time2;
|
|
|
|
double timeoffset;
|
|
int mwoffset;
|
|
double timewindow;
|
|
double timeoffset2;
|
|
double timewindow2;
|
|
|
|
if(ethercat){
|
|
rootTree->Branch("ic1_avg", &ic1_avg, "ic1_avg/D");
|
|
rootTree->Branch("mw1_posx", &mw1_posx_avg, "mw1_posx/D");
|
|
rootTree->Branch("mw1_posy", &mw1_posy_avg, "mw1_posy/D");
|
|
rootTree->Branch("energy_index", &energy_index, "energy_index/D");
|
|
rootTree->Branch("intensity_index", &intensity_index, "intensity_index/D");
|
|
rootTree->Branch("ionsort", &ionsort, "ionsort/D");
|
|
|
|
|
|
timeoffset = -0.050; //offset between ic and bpm readouts
|
|
mwoffset = 2; // offset for timestamped event. MW chamber position correlation seems to be better in other windows
|
|
timewindow = -0.0999; //should be a negative number. window size in time to average over.
|
|
timeoffset2 = -0.00; //offset between ic and bpm readouts
|
|
timewindow2 = -0.0999; //should be a negative number. window size in time to average over.
|
|
//////////////////////////////////////////////////////////////////
|
|
///// ETHERCAT DATA
|
|
//////////////////////////////////////////////////////////////////
|
|
// tree->SetBranchAddress("time", &time);
|
|
|
|
tree2->SetBranchAddress("RELTIME2", &rel_time2);
|
|
tree2->SetBranchAddress("TIME2", &time2);
|
|
tree2->SetBranchAddress("IC1", &ic1);
|
|
// tree2->SetBranchAddress("IC2", &ic2);
|
|
//tree2->SetBranchAddress("MW1_FOCUSX", &mw1_focusx);
|
|
//tree2->SetBranchAddress("MW1_FOCUSY", &mw1_focusy);
|
|
///tree2->SetBranchAddress("MW2_FOCUSX", &mw2_focusx);
|
|
///tree2->SetBranchAddress("MW2_FOCUSY", &mw2_focusy);
|
|
tree2->SetBranchAddress("MW1_POSX", &mw1_posx);
|
|
tree2->SetBranchAddress("MW1_POSY", &mw1_posy);
|
|
//tree2->SetBranchAddress("MW2_POSX", &mw2_posx);
|
|
//tree2->SetBranchAddress("MW2_POSY", &mw2_posy);
|
|
tree2->SetBranchAddress("ENERGY_INDEX", &energy_index);
|
|
tree2->SetBranchAddress("INTENSITY_INDEX", &intensity_index);
|
|
tree2->SetBranchAddress("ION-SORT", &ionsort);
|
|
tree2->SetBranchAddress("ANALOG_IN1", &analog_in1);
|
|
}
|
|
|
|
|
|
|
|
|
|
int currentEntryTree2 = 1;
|
|
|
|
// int nevents = tree->GetEntries();
|
|
int nevents2 = tree2->GetEntries();
|
|
|
|
int icCounter = 0;
|
|
|
|
int count = 0;
|
|
int count2 = 0;
|
|
|
|
//loop through recorded data frames
|
|
for (int frame = 0; frame<fileframesize; frame++){
|
|
// if (icCounter>10000) break;
|
|
// if(frame>2000&&frame<120000) continue;
|
|
eventID = frame;
|
|
if (ethercat){
|
|
if (timestampfile) timestampfile >> time ;
|
|
//printf("%i %f\n", eventID, time);
|
|
|
|
count= 0;
|
|
count2 = 0;
|
|
ic1_avg = 0.;
|
|
mw1_posx_avg = 0.;
|
|
mw1_posy_avg = 0.;
|
|
tree2->GetEntry(currentEntryTree2);
|
|
|
|
|
|
/* if (frame % 100 == 0)
|
|
{
|
|
|
|
printf("merging event %d ,", frame);
|
|
printf("Time %f \n", time);
|
|
printf("Entry hit %d ,", currentEntryTree2);
|
|
printf("Time hit %f \n", time2);
|
|
}
|
|
*/
|
|
|
|
while (time2 < time + timeoffset && currentEntryTree2 < nevents2 )
|
|
{
|
|
if (time2 - time - timeoffset > timewindow)
|
|
{
|
|
tree2->GetEntry(currentEntryTree2);
|
|
|
|
if (ic1>0.0) ic1_avg += ic1;
|
|
|
|
if (ic1>0.0) count++;
|
|
// if (frame % 200 == 0) printf("%i %2.3f %2.3f %2.3f %2.3f %2.3f %i \n", count, ic1, time2, time, timeoffset, time2 - time - timeoffset, mwoffset);
|
|
}
|
|
|
|
tree2->GetEntry(currentEntryTree2);
|
|
|
|
if ( time2 - time - timeoffset2 > timewindow2)
|
|
{
|
|
tree2->GetEntry(currentEntryTree2 + mwoffset); //why currentEtryTree2-4?
|
|
mw1_posx_avg += mw1_posx;
|
|
mw1_posy_avg += mw1_posy;
|
|
count2++;
|
|
// if (i % 2000 == 0) printf("%i %2.3f %2.3f %2.3f %2.3f\n", count2, time, time2, ic1, mw1_posx);
|
|
//if (i % 2001 == 0) printf("%i %2.3f %2.3f %2.3f %2.3f\n", count2, time, time2, ic1, mw1_posx);
|
|
// if (i % 2002 == 0) printf("%i %2.3f %2.3f %2.3f %2.3f\n", count2, time, time2, ic1, mw1_posx);
|
|
// printf("%i %2.3f %2.3f %2.3f %2.3f\n", count2, time, time2, ic1, mw1_posx);
|
|
}
|
|
// currentEntryTree2++;
|
|
tree2->GetEntry(currentEntryTree2);
|
|
currentEntryTree2++;
|
|
|
|
|
|
|
|
|
|
if (count2>0){
|
|
mw1_posx_avg /= double(count2); //the positions are weighted by the charge
|
|
mw1_posy_avg /= double(count2);
|
|
}
|
|
if(count>0){
|
|
ic1_avg /= double(count);
|
|
if (ic1_avg>1.) icCounter++;
|
|
// if (frame % 2000 == 0) printf("%i %f.2 %i \n", count, ic1_avg, icCounter);
|
|
}
|
|
// std::cout << ic1_avg << " " << icCounter << std::endl;
|
|
|
|
|
|
}
|
|
/////////end of ethercat matching
|
|
|
|
if (floor(energy_index/10.)>=0&&floor(energy_index/10)<=26){energy_indexbin = floor(energy_index/10.);}
|
|
else {energy_indexbin=27;}
|
|
|
|
|
|
if (ionsort==3){
|
|
//protons
|
|
energy = energy_list_p[ energy_indexbin];
|
|
intensity = intensity_list_p[ int(intensity_index) ];
|
|
sp_air = f_sp_air->Eval(energy)*(intensity/1.0E6);
|
|
sp_ps = f_sp_ps->Eval(energy)*(intensity/1.0E6);
|
|
sp2_air = f_sp_air->Eval(energy);
|
|
sp2_ps = f_sp_ps->Eval(energy);
|
|
lorentz_gamma = energy/938.272 +1.; // lorentz_gamma = E_u/M_u +1
|
|
mybeta = sqrt(1. - 1./(lorentz_gamma*lorentz_gamma));
|
|
zsqr = 1.;
|
|
}
|
|
else if (ionsort==1){
|
|
//helium
|
|
energy = energy_list_he[ energy_indexbin ];
|
|
intensity = intensity_list_he[ int(intensity_index) ];
|
|
sp_air = f_h2sp_air->Eval(energy)*(intensity/1.0E6);
|
|
sp_ps = f_h2sp_ps->Eval(energy)*(intensity/1.0E6);
|
|
sp2_air = f_h2sp_air->Eval(energy);
|
|
sp2_ps = f_h2sp_ps->Eval(energy);
|
|
lorentz_gamma = energy/932.1055 +1.;// lorentz_gamma = E_u/M_u +1
|
|
mybeta = sqrt(1. - 1./(lorentz_gamma*lorentz_gamma));
|
|
zsqr = 4.;
|
|
|
|
}
|
|
else if (ionsort==4){
|
|
//carbon
|
|
energy = energy_list_c[ energy_indexbin];
|
|
intensity = intensity_list_c[ int(intensity_index) ];
|
|
|
|
sp_air = f_c12sp_air->Eval(energy)*(intensity/1.0E6);
|
|
sp_ps = f_c12sp_ps->Eval(energy)*(intensity/1.0E6);
|
|
sp2_air = f_c12sp_air->Eval(energy);
|
|
sp2_ps = f_c12sp_ps->Eval(energy);
|
|
lorentz_gamma = energy/932.3539 +1.;// lorentz_gamma = E_u/M_u +1
|
|
mybeta = sqrt(1. - 1./(lorentz_gamma*lorentz_gamma));
|
|
zsqr = 36.;
|
|
|
|
}
|
|
else if (ionsort==2){
|
|
//oxygen
|
|
energy = energy_list_o[ energy_indexbin];
|
|
intensity = intensity_list_o[ int(intensity_index) ];
|
|
sp_air = f_o16sp_air->Eval(energy)*(intensity/1.0E6);
|
|
sp_ps = f_o16sp_ps->Eval(energy)*(intensity/1.0E6);
|
|
sp2_air = f_o16sp_air->Eval(energy);
|
|
sp2_ps = f_o16sp_ps->Eval(energy);
|
|
lorentz_gamma = energy/931.4418 +1.;// lorentz_gamma = E_u/M_u +1
|
|
mybeta = sqrt(1. - 1./(lorentz_gamma*lorentz_gamma));
|
|
zsqr = 64.;
|
|
|
|
}
|
|
else {
|
|
sp_air = -1.;
|
|
sp_ps = -1.;
|
|
sp2_air = -1.;
|
|
sp2_ps = -1.;
|
|
lorentz_gamma = 0.;
|
|
mybeta = 0.;
|
|
zsqr = -1.;
|
|
|
|
}
|
|
// intcorr = (Intensity /19.8E6) / (totalcurrent/sp2_air/totaltime);
|
|
intcorr = (intensity / 19.8E6) / (ic1_avg/sp2_air)/ 3.11;
|
|
|
|
|
|
// if (frame>2000&&ic1_avg<0.5) continue;
|
|
}
|
|
|
|
///////////////////////////////////
|
|
//// HIT DATA
|
|
///////////////////////////////////
|
|
if (frame>2000 && beam_wason == true && beam_off == true) { beamoffcounter++;
|
|
// cout << beamoffcounter<< endl;
|
|
}
|
|
if (samplenoise==false && frame> 2000 && beam_wason == true && beam_off == true && beamoffcounter==5000) {
|
|
samplenoise = true;
|
|
}
|
|
|
|
//board_b 0
|
|
board_b=0;
|
|
signal_b0 = 0.;
|
|
maxchannelamp_b0 = 0.;
|
|
|
|
file.seekg(framestart*sizeof(BufferData)+board_b*sizeof(BufferData)+4*frame*sizeof(BufferData));
|
|
file.read ((char*)dataptr ,sizeof(BufferData));
|
|
if (dataptr->sync_frame.device_nr==board_b){
|
|
// std::cout << frame << " " << dataptr->sync_frame.device_nr << " " << dataptr->sync_frame.local_ctr << " " << dataptr->sync_frame.global_ctr << " " << dataptr->sync_frame.sma_state << std::endl;
|
|
if (frame%10000==0) std::cout << "Frame: " << frame << " (" <<double(frame)/double(fileframesize)*100.0 << "%)" << std::endl;
|
|
|
|
arrayavg_b0 = 0;
|
|
//shift the events of the rolling average of the signal one left
|
|
for (int j = 1; j<length;j++){
|
|
array_b0[j-1] = array_b0[j];
|
|
arrayavg_b0 += array_b0[j-1];
|
|
// cout << array_b0[j-1] << " ";
|
|
}
|
|
array_b0[length-1] = 0.;
|
|
// cout << endl;
|
|
|
|
///loop over the channels
|
|
for (int i = 0;i<128;i++){
|
|
board_b0_ch[i] = dataptr->sensor_data[i];
|
|
if (frame<1000 || samplenoise==true){
|
|
if (samplenoise==true&& beamoffcounter==5000) {
|
|
board_b0_ch_bkg[i]=0.;
|
|
if(i==0) cout << frame << " Resampling noise " << beamoffcounter << endl;
|
|
}
|
|
board_b0_ch_bkg[i] += board_b0_ch[i]/1000.; //find baseline from the average of first 1000 events
|
|
if (samplenoise==true && beamoffcounter==6000) {
|
|
beam_wason = false;
|
|
samplenoise =false;
|
|
cout << frame << " End sampling." << endl;
|
|
}
|
|
}
|
|
else if (frame>=1000&& frame<2000){
|
|
board_b0_ch[i] -= board_b0_ch_bkg[i]; //histogram the subtracted baseline in the next 1000 events
|
|
th2_signal_vs_channel_bkg_b0->Fill(i,board_b0_ch[i]);
|
|
if (i==1) graph_bkg_b0->SetPoint(graph_bkg_b0->GetN(), frame, board_b0_ch[i]);
|
|
}
|
|
else if (frame>=2000 && samplenoise==false) {
|
|
board_b0_ch[i]-=board_b0_ch_bkg[i]; // the rest background subtracted
|
|
// board_b0_ch[i]*=calibration_b0[i]; //calibration factor
|
|
th2_signal_vs_channel_b0->Fill(i,board_b0_ch[i]);
|
|
|
|
//find the peak channel
|
|
if (board_b0_ch[i]> maxchannelamp_b0) {
|
|
maxchannel_b0 = i;
|
|
maxchannelamp_b0 = board_b0_ch[i];
|
|
// cout << maxchannel_b0 << " " <<maxchannelamp_b0 << endl;
|
|
}
|
|
|
|
///add new event to the rolling average.
|
|
if( board_b0_ch[i]>50.0){
|
|
array_b0[length-1] += board_b0_ch[i];
|
|
}
|
|
////////////////////////////////////////////
|
|
}
|
|
|
|
|
|
}//end of 128
|
|
// th1_signal_b0->Fill(signal_b0);
|
|
if (frame>2000) {
|
|
arrayavg_b0 += array_b0[length-1]/length;
|
|
if (arrayavg_b0>= 20000) {
|
|
beamoncounter++;
|
|
}
|
|
if (beamoncounter>1000 && beam_wason == false && arrayavg_b0>= 20000) {
|
|
beam_off = false;
|
|
beam_wason = true;
|
|
cout << frame << " Beam on " << arrayavg_b0 << endl;
|
|
}
|
|
if (arrayavg_b0< 10000) {
|
|
if(beam_wason== true && beam_off==false ) {
|
|
cout << frame << "Beam went OFF!" << arrayavg_b0 << endl;
|
|
beamoffcounter = 0;
|
|
}
|
|
beam_off = true;
|
|
|
|
}
|
|
}
|
|
|
|
// cout << frame << " Rolling average: " << arrayavg_b0 << endl;// " ic: " << ic1_avg << endl;
|
|
|
|
}
|
|
else {
|
|
std::cout << "Error." << std::endl;
|
|
}
|
|
|
|
//board_b 1
|
|
board_b=1;
|
|
signal_b1 = 0.;
|
|
maxchannelamp_b1 = 0.;
|
|
|
|
file.seekg(framestart*sizeof(BufferData)+board_b*sizeof(BufferData)+4*frame*sizeof(BufferData));
|
|
file.read ((char*)dataptr ,sizeof(BufferData));
|
|
if (dataptr->sync_frame.device_nr==board_b){
|
|
// std::cout << frame << " " << dataptr->sync_frame.device_nr << " " << dataptr->sync_frame.local_ctr << " " << dataptr->sync_frame.global_ctr << " " << dataptr->sync_frame.sma_state << std::endl;
|
|
|
|
|
|
arrayavg_b1 = 0;
|
|
//shift the events of the rolling average of the signal one left
|
|
for (int j = 1; j<length;j++){
|
|
array_b1[j-1] = array_b1[j];
|
|
arrayavg_b1 += array_b1[j-1];
|
|
// cout << array_b1[j-1] << " ";
|
|
}
|
|
array_b1[length-1] = 0.;
|
|
// cout << endl;
|
|
|
|
///loop over the channels
|
|
for (int i = 0;i<128;i++){
|
|
board_b1_ch[i] = dataptr->sensor_data[i];
|
|
if (frame<1000){
|
|
board_b1_ch_bkg[i] += board_b1_ch[i]/1000.; //find baseline from the average of first 1000 events
|
|
|
|
}
|
|
else if (frame>=1000&& frame<2000){
|
|
board_b1_ch[i] -= board_b1_ch_bkg[i]; //histogram the subtracted baseline in the next 1000 events
|
|
th2_signal_vs_channel_bkg_b1->Fill(i,board_b1_ch[i]);
|
|
if (i==1) graph_bkg_b1->SetPoint(graph_bkg_b1->GetN(), frame, board_b1_ch[i]);
|
|
}
|
|
else if (frame>=2000) {
|
|
board_b1_ch[i]-=board_b1_ch_bkg[i]; // the rest background subtracted
|
|
// board_b1_ch[i]*=calibration_b1[i]; //calibration factor
|
|
th2_signal_vs_channel_b1->Fill(i,board_b1_ch[i]);
|
|
|
|
//find the peak channel
|
|
if (board_b1_ch[i]> maxchannelamp_b1) {
|
|
maxchannel_b1 = i;
|
|
maxchannelamp_b1 = board_b1_ch[i];
|
|
// cout << maxchannel_b1 << " " <<maxchannelamp_b1 << endl;
|
|
}
|
|
|
|
///add new event to the rolling average.
|
|
if( board_b1_ch[i]>50.0){
|
|
array_b1[length-1] += board_b1_ch[i];
|
|
}
|
|
////////////////////////////////////////////
|
|
}
|
|
|
|
|
|
}//end of 128
|
|
// th1_signal_b1->Fill(signal_b1);
|
|
arrayavg_b1 += array_b1[length-1]/length;
|
|
|
|
// cout << frame << " Rolling average: " << arrayavg_b1 << endl;// " ic: " << ic1_avg << endl;
|
|
|
|
}
|
|
else {
|
|
std::cout << "Error." << std::endl;
|
|
}
|
|
|
|
|
|
//board_b 2
|
|
board_b=2;
|
|
signal_b2 = 0.;
|
|
maxchannelamp_b2 = 0.;
|
|
|
|
file.seekg(framestart*sizeof(BufferData)+board_b*sizeof(BufferData)+4*frame*sizeof(BufferData));
|
|
file.read ((char*)dataptr ,sizeof(BufferData));
|
|
if (dataptr->sync_frame.device_nr==board_b){
|
|
// std::cout << frame << " " << dataptr->sync_frame.device_nr << " " << dataptr->sync_frame.local_ctr << " " << dataptr->sync_frame.global_ctr << " " << dataptr->sync_frame.sma_state << std::endl;
|
|
|
|
|
|
arrayavg_b2 = 0;
|
|
//shift the events of the rolling average of the signal one left
|
|
for (int j = 1; j<length;j++){
|
|
array_b2[j-1] = array_b2[j];
|
|
arrayavg_b2 += array_b2[j-1];
|
|
// cout << array_b2[j-1] << " ";
|
|
}
|
|
array_b2[length-1] = 0.;
|
|
// cout << endl;
|
|
|
|
///loop over the channels
|
|
for (int i = 0;i<128;i++){
|
|
board_b2_ch[i] = dataptr->sensor_data[i];
|
|
if (frame<1000){
|
|
board_b2_ch_bkg[i] += board_b2_ch[i]/1000.; //find baseline from the average of first 1000 events
|
|
|
|
}
|
|
else if (frame>=1000&& frame<2000){
|
|
board_b2_ch[i] -= board_b2_ch_bkg[i]; //histogram the subtracted baseline in the next 1000 events
|
|
th2_signal_vs_channel_bkg_b2->Fill(i,board_b2_ch[i]);
|
|
if (i==1) graph_bkg_b2->SetPoint(graph_bkg_b2->GetN(), frame, board_b2_ch[i]);
|
|
}
|
|
else if (frame>=2000) {
|
|
board_b2_ch[i]-=board_b2_ch_bkg[i]; // the rest background subtracted
|
|
// board_b2_ch[i]*=calibration_b2[i]; //calibration factor
|
|
th2_signal_vs_channel_b2->Fill(i,board_b2_ch[i]);
|
|
|
|
//find the peak channel
|
|
if (board_b2_ch[i]> maxchannelamp_b2) {
|
|
maxchannel_b2 = i;
|
|
maxchannelamp_b2 = board_b2_ch[i];
|
|
// cout << maxchannel_b2 << " " <<maxchannelamp_b2 << endl;
|
|
}
|
|
|
|
///add new event to the rolling average.
|
|
if( board_b2_ch[i]>50.0){
|
|
array_b2[length-1] += board_b2_ch[i];
|
|
}
|
|
////////////////////////////////////////////
|
|
}
|
|
|
|
|
|
}//end of 128
|
|
// th1_signal_b2->Fill(signal_b2);
|
|
arrayavg_b2 += array_b2[length-1]/length;
|
|
|
|
// cout << frame << " Rolling average: " << arrayavg_b2 << endl;// " ic: " << ic1_avg << endl;
|
|
|
|
}
|
|
else {
|
|
std::cout << "Error." << std::endl;
|
|
}
|
|
|
|
|
|
//board_b 3
|
|
board_b=3;
|
|
signal_b3 = 0.;
|
|
maxchannelamp_b3 = 0.;
|
|
|
|
file.seekg(framestart*sizeof(BufferData)+board_b*sizeof(BufferData)+4*frame*sizeof(BufferData));
|
|
file.read ((char*)dataptr ,sizeof(BufferData));
|
|
if (dataptr->sync_frame.device_nr==board_b){
|
|
// std::cout << frame << " " << dataptr->sync_frame.device_nr << " " << dataptr->sync_frame.local_ctr << " " << dataptr->sync_frame.global_ctr << " " << dataptr->sync_frame.sma_state << std::endl;
|
|
|
|
arrayavg_b3 = 0;
|
|
//shift the events of the rolling average of the signal one left
|
|
for (int j = 1; j<length;j++){
|
|
array_b3[j-1] = array_b3[j];
|
|
arrayavg_b3 += array_b3[j-1];
|
|
// cout << array_b3[j-1] << " ";
|
|
}
|
|
array_b3[length-1] = 0.;
|
|
// cout << endl;
|
|
|
|
///loop over the channels
|
|
for (int i = 0;i<128;i++){
|
|
board_b3_ch[i] = dataptr->sensor_data[i];
|
|
if (frame<1000){
|
|
board_b3_ch_bkg[i] += board_b3_ch[i]/1000.; //find baseline from the average of first 1000 events
|
|
|
|
}
|
|
else if (frame>=1000&& frame<2000){
|
|
board_b3_ch[i] -= board_b3_ch_bkg[i]; //histogram the subtracted baseline in the next 1000 events
|
|
th2_signal_vs_channel_bkg_b3->Fill(i,board_b3_ch[i]);
|
|
if (i==1) graph_bkg_b3->SetPoint(graph_bkg_b3->GetN(), frame, board_b3_ch[i]);
|
|
}
|
|
else if (frame>=2000) {
|
|
board_b3_ch[i]-=board_b3_ch_bkg[i]; // the rest background subtracted
|
|
// board_b3_ch[i]*=calibration_b3[i]; //calibration factor
|
|
th2_signal_vs_channel_b3->Fill(i,board_b3_ch[i]);
|
|
|
|
//find the peak channel
|
|
if (board_b3_ch[i]> maxchannelamp_b3) {
|
|
maxchannel_b3 = i;
|
|
maxchannelamp_b3 = board_b3_ch[i];
|
|
// cout << maxchannel_b3 << " " <<maxchannelamp_b3 << endl;
|
|
}
|
|
|
|
///add new event to the rolling average.
|
|
if( board_b3_ch[i]>50.0){
|
|
array_b3[length-1] += board_b3_ch[i];
|
|
}
|
|
////////////////////////////////////////////
|
|
}
|
|
|
|
|
|
}//end of 128
|
|
// th1_signal_b3->Fill(signal_b3);
|
|
arrayavg_b3 += array_b3[length-1]/length;
|
|
|
|
// cout << frame << " Rolling average: " << arrayavg_b3 << endl;// " ic: " << ic1_avg << endl;
|
|
|
|
}
|
|
else {
|
|
std::cout << "Error." << std::endl;
|
|
}
|
|
|
|
|
|
////////////////////////////////////////////////////////////
|
|
////////////////////////////////////////////////////////////
|
|
//start the signal analysis
|
|
////////////////////////////////////////////////////////////
|
|
////////////////////////////////////////////////////////////
|
|
|
|
if (frame>=2000&&beam_off == false&&beam_wason == true){
|
|
|
|
|
|
|
|
|
|
|
|
|
|
////////////////////////////////////////////////////////////
|
|
//find the approx FWHM
|
|
////////////////////////////////////////////////////////////
|
|
|
|
nfwhm_b0 =0;
|
|
nfwhm_b1 =0;
|
|
nfwhm_b2 =0;
|
|
nfwhm_b3 =0;
|
|
|
|
for (int i = 0;i<128;i++){
|
|
if (board_b0_ch[i] > maxchannelamp_b0/3.) nfwhm_b0++; //switched to a lower threshold 1/3 instead of 1/2
|
|
if (board_b1_ch[i] > maxchannelamp_b1/3.) nfwhm_b1++;
|
|
if (board_b2_ch[i] > maxchannelamp_b2/3.) nfwhm_b2++;
|
|
if (board_b3_ch[i] > maxchannelamp_b3/3.) nfwhm_b3++;
|
|
signal_gsl_b0[i] = 0.;
|
|
signal_gsl_b1[i] = 0.;
|
|
signal_gsl_b2[i] = 0.;
|
|
signal_gsl_b3[i] = 0.;
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
////////////////////////////////////////////////////////////
|
|
//integrate under the approximate peak
|
|
//build the channel list for statistical analysis
|
|
////////////////////////////////////////////////////////////
|
|
|
|
numtocalc_b0 = 0;
|
|
numtocalc_b1 = 0;
|
|
numtocalc_b2 = 0;
|
|
numtocalc_b3 = 0;
|
|
signal_b0 = 0.;
|
|
|
|
|
|
// cout << energy_indexbin << endl;
|
|
for (int i = maxchannel_b0-nfwhm_b0 ; i <= maxchannel_b0 + nfwhm_b0; i++){
|
|
if (i>=0 && i<=127 && board_b0_ch[i]>0){
|
|
signal_b0 +=board_b0_ch[i];
|
|
signal_gsl_b0[numtocalc_b0]=board_b0_ch[i];
|
|
// channellist_gsl_b0[numtocalc_b0] = i;
|
|
channellist_gsl_b0[numtocalc_b0] = pos[i];
|
|
numtocalc_b0++;
|
|
}
|
|
}
|
|
th1_signal_b0->Fill(signal_b0); //cout << signal_b0 << endl;
|
|
if (ic1_avg>0.1) h_beamSignal_b0[energy_indexbin]->Fill(signal_b0);
|
|
|
|
|
|
signal_b1 = 0.;
|
|
for (int i = maxchannel_b1-nfwhm_b1 ; i <= maxchannel_b1 + nfwhm_b1; i++){
|
|
if (i>=0 && i<=127&&board_b1_ch[i]>0){
|
|
signal_b1 +=board_b1_ch[i] ;
|
|
signal_gsl_b1[numtocalc_b1]=board_b1_ch[i];
|
|
// channellist_gsl_b1[numtocalc_b1] = i;
|
|
channellist_gsl_b1[numtocalc_b1] = pos[i];
|
|
numtocalc_b1++;
|
|
}
|
|
}
|
|
th1_signal_b0->Fill(signal_b1);
|
|
if (ic1_avg>0.1) h_beamSignal_b1[energy_indexbin]->Fill(signal_b1);
|
|
|
|
|
|
signal_b2 = 0.;
|
|
for (int i = maxchannel_b2-nfwhm_b2 ; i <= maxchannel_b2 + nfwhm_b2; i++){
|
|
if (i>=0 && i<=127&&board_b2_ch[i]>0){
|
|
signal_b2 +=board_b2_ch[i];
|
|
signal_gsl_b2[numtocalc_b2]=board_b2_ch[i];
|
|
// channellist_gsl_b2[numtocalc_b2] = i;
|
|
channellist_gsl_b2[numtocalc_b2] = pos[i];
|
|
numtocalc_b2++;
|
|
}
|
|
}
|
|
|
|
th1_signal_b0->Fill(signal_b2);
|
|
if (ic1_avg>0.1) h_beamSignal_b2[energy_indexbin]->Fill(signal_b2);
|
|
|
|
signal_b3 = 0.;
|
|
for (int i = maxchannel_b3-nfwhm_b3 ; i <= maxchannel_b3 + nfwhm_b3; i++){
|
|
if (i>=0 && i<=127&&board_b3_ch[i]>0){
|
|
signal_b3 +=board_b3_ch[i];
|
|
signal_gsl_b3[numtocalc_b3]=board_b3_ch[i];
|
|
//channellist_gsl_b3[numtocalc_b3] = i;
|
|
channellist_gsl_b3[numtocalc_b3] = pos[i];
|
|
numtocalc_b3++;
|
|
}
|
|
}
|
|
th1_signal_b0->Fill(signal_b3);
|
|
if (ic1_avg>0.1) {h_beamSignal_b3[energy_indexbin]->Fill(signal_b3);
|
|
h_beamSignal_ic1[energy_indexbin]->Fill(ic1_avg);
|
|
}
|
|
|
|
|
|
signal_cor_b0 = signal_b0*intcorr/(intensity/1.E6)/sp2_ps;
|
|
signal_cor_b1 = signal_b1*intcorr/(intensity/1.E6)/sp2_ps;
|
|
signal_cor_b2 = signal_b2*intcorr/(intensity/1.E6)/sp2_ps;
|
|
signal_cor_b3 = signal_b3*intcorr/(intensity/1.E6)/sp2_ps;
|
|
if (signal_cor_b0 >0.05 && signal_cor_b0 < 10.) {h_beamSignal_cor_b0[energy_indexbin]->Fill(signal_cor_b0);}
|
|
if (signal_cor_b1 >0.05 && signal_cor_b1 < 10.) {h_beamSignal_cor_b1[energy_indexbin]->Fill(signal_cor_b1);}
|
|
if (signal_cor_b2 >0.05 && signal_cor_b2 < 10.) {h_beamSignal_cor_b2[energy_indexbin]->Fill(signal_cor_b2);}
|
|
if (signal_cor_b3 >0.05 && signal_cor_b3 < 10.) {h_beamSignal_cor_b3[energy_indexbin]->Fill(signal_cor_b3);}
|
|
|
|
///////////////// linear regression using Integration by parts of gaussian function.
|
|
|
|
if (doLinInt&&numtocalc_b0>=3&&numtocalc_b1>=3&&numtocalc_b2>=3&&numtocalc_b3>=3){
|
|
for (int j = 0; j<=4; j++){
|
|
if (j== 0) {
|
|
copy(signal_gsl_b0,signal_gsl_b0+128, signal_reg);
|
|
copy(channellist_gsl_b0,channellist_gsl_b0+128, channellist_reg);
|
|
numtocalc_reg = numtocalc_b0;
|
|
}
|
|
else if (j== 1) {
|
|
copy(signal_gsl_b1,signal_gsl_b1+128, signal_reg);
|
|
copy(channellist_gsl_b1,channellist_gsl_b1+128, channellist_reg);
|
|
numtocalc_reg = numtocalc_b1;
|
|
}
|
|
else if (j== 2) {
|
|
copy(signal_gsl_b2,signal_gsl_b2+128, signal_reg);
|
|
copy(channellist_gsl_b2,channellist_gsl_b2+128, channellist_reg);
|
|
numtocalc_reg = numtocalc_b2;
|
|
}
|
|
else if (j== 3) {
|
|
copy(signal_gsl_b3,signal_gsl_b3+128, signal_reg);
|
|
copy(channellist_gsl_b3,channellist_gsl_b3+128, channellist_reg);
|
|
numtocalc_reg = numtocalc_b3;
|
|
}
|
|
SumY = 0.;
|
|
SumS = 0.;
|
|
SumT = 0.;
|
|
SumS2 = 0.;
|
|
SumST = 0.;
|
|
SumT2 = 0.;
|
|
SumYS = 0.;
|
|
SumYT = 0.;
|
|
b_den = 0.;
|
|
b_num = 0.;
|
|
b = 0.;
|
|
SumYYM = 0.;
|
|
SumYYP = 0.;
|
|
MeanY = 0.;
|
|
|
|
|
|
for(int k=0; k<numtocalc_b0;k++){
|
|
if (k==0){
|
|
S[k]=0.; T[k]=0.;
|
|
}
|
|
else{
|
|
S[k] = S[k-1]+0.5*( signal_reg[k] + signal_reg[k-1] ) * ( channellist_reg[k] - channellist_reg[k-1] );
|
|
T[k] = T[k-1]+0.5*( channellist_reg[k] * signal_reg[k] + channellist_reg[k-1] * signal_reg[k-1] ) * ( channellist_reg[k] - channellist_reg[k-1] );
|
|
}
|
|
// cout << S[k] << " " << T[k] << endl;
|
|
SumS += S[k]; SumT += T[k];
|
|
SumY += signal_reg[k];
|
|
SumS2 += S[k]*S[k]; SumST += S[k]*T[k]; SumT2 += T[k]*T[k];
|
|
SumYS += signal_reg[k]*S[k];
|
|
SumYT += signal_reg[k]*T[k];
|
|
MeanY+=signal_reg[k];
|
|
}
|
|
MeanY/=numtocalc_reg;
|
|
|
|
|
|
M1(0,0) = SumT2; M1(0,1) = SumST; M1(0,2) = SumT; M1(1,0) = SumST; M1(1,1) = SumS2;
|
|
M1(1,2) = SumS; M1(2,0) = SumT; M1(2,1) = SumS;
|
|
M1(2,2) = numtocalc_reg;
|
|
|
|
M2(0) = SumYT; M2(1) = SumYS; M2(2) = SumY;
|
|
M1inv = M1.Invert(); ABC = M1inv * M2;
|
|
|
|
|
|
|
|
|
|
//calculate b,p,c ---> y = b*exp(-p*(x-c)*(x-c))
|
|
p = -ABC(0)/2.; c = -ABC(1)/ABC(0);
|
|
|
|
for(int k=0; k<numtocalc_reg;k++){
|
|
b_num += exp(-p*(channellist_reg[k]-c)*(channellist_reg[k]-c)) * signal_reg[k];
|
|
b_den += exp(-2*p*(channellist_reg[k]-c)*(channellist_reg[k]-c));
|
|
|
|
}
|
|
b = b_num/b_den;
|
|
|
|
|
|
//calculate R-squared
|
|
///residual plots (should be normally distributed). They are normalised to the standard error of the baseline (17 ADC units)
|
|
|
|
for(int k=0; k<numtocalc_reg;k++){
|
|
SumYYM+= (signal_reg[k]-MeanY)*(signal_reg[k]-MeanY);
|
|
SumYYP+= (b*exp(-p*(channellist_reg[k]-c)*(channellist_reg[k]-c)) - MeanY )*(b*exp(-p*(channellist_reg[k]-c)*(channellist_reg[k]-c)) - MeanY );
|
|
|
|
if (j == 0) {
|
|
h_regresidual_b0->Fill((b*exp(-p*(channellist_reg[k]-c)*(channellist_reg[k]-c)) - signal_reg[k])/signal_reg[k]);
|
|
th2_resid_vs_channel_bkg_b0->Fill(channellist_reg[k],(b*exp(-p*(channellist_reg[k]-c)*(channellist_reg[k]-c)) - signal_reg[k])/signal_reg[k]);
|
|
}
|
|
if (j == 1) {
|
|
h_regresidual_b1->Fill((b*exp(-p*(channellist_reg[k]-c)*(channellist_reg[k]-c)) - signal_reg[k])/signal_reg[k]);
|
|
th2_resid_vs_channel_bkg_b1->Fill(channellist_reg[k],(b*exp(-p*(channellist_reg[k]-c)*(channellist_reg[k]-c)) - signal_reg[k])/signal_reg[k]);
|
|
}
|
|
if (j == 2) {
|
|
h_regresidual_b2->Fill((b*exp(-p*(channellist_reg[k]-c)*(channellist_reg[k]-c)) - signal_reg[k])/signal_reg[k]);
|
|
th2_resid_vs_channel_bkg_b2->Fill(channellist_reg[k],(b*exp(-p*(channellist_reg[k]-c)*(channellist_reg[k]-c)) - signal_reg[k])/signal_reg[k]);
|
|
}
|
|
if (j == 3) {
|
|
h_regresidual_b3->Fill((b*exp(-p*(channellist_reg[k]-c)*(channellist_reg[k]-c)) - signal_reg[k])/signal_reg[k]);
|
|
th2_resid_vs_channel_bkg_b3->Fill(channellist_reg[k],(b*exp(-p*(channellist_reg[k]-c)*(channellist_reg[k]-c)) - signal_reg[k])/signal_reg[k]);
|
|
}
|
|
|
|
}
|
|
// cout << "R-squared = " << SumYYP/SumYYM << endl;
|
|
|
|
|
|
//final results
|
|
|
|
if (j == 0) {
|
|
beamFocusX_reg_b0 = 2.3548/sqrt(2*p);
|
|
beamPosX_reg_b0 = -ABC(1)/ ABC(0);
|
|
beamPeakX_reg_b0 = b;
|
|
beamRsqr_b0 = SumYYP/SumYYM;
|
|
beamSkewX_b0 = gsl_stats_wskew_m_sd(signal_reg,1,channellist_reg,1,numtocalc_reg,beamPosX_reg_b0,beamFocusX_reg_b0/2.3548); //skewness (symmetry)
|
|
beamKurtX_b0 = gsl_stats_wkurtosis_m_sd(signal_reg,1,channellist_reg,1,numtocalc_reg,beamPosX_reg_b0,beamFocusX_reg_b0/2.3548); //excess kurtosis (well behaved tails)
|
|
|
|
M1elements_b0[0] = SumT2;
|
|
M1elements_b0[1] = SumST;
|
|
M1elements_b0[2] = SumT;
|
|
M1elements_b0[3] = SumST;
|
|
M1elements_b0[4] = SumS2;
|
|
M1elements_b0[5] = SumS;
|
|
M1elements_b0[6] = SumT;
|
|
M1elements_b0[7] = SumS;
|
|
M1elements_b0[8] = numtocalc_reg;
|
|
}
|
|
else if (j == 1) {
|
|
beamFocusX_reg_b1 = 2.3548/sqrt(2*p);
|
|
beamPosX_reg_b1 = -ABC(1)/ ABC(0);
|
|
beamPeakX_reg_b1 = b;
|
|
|
|
beamRsqr_b1 = SumYYP/SumYYM;
|
|
beamSkewX_b1 = gsl_stats_wskew_m_sd(signal_reg,1,channellist_reg,1,numtocalc_reg,beamPosX_reg_b1,beamFocusX_reg_b1/2.3548); //skewness (symmetry)
|
|
beamKurtX_b1 = gsl_stats_wkurtosis_m_sd(signal_reg,1,channellist_reg,1,numtocalc_reg,beamPosX_reg_b1,beamFocusX_reg_b1/2.3548); //excess kurtosis (well behaved tails)
|
|
|
|
M1elements_b0[0] = SumT2;
|
|
M1elements_b1[1] = SumST;
|
|
M1elements_b1[2] = SumT;
|
|
M1elements_b1[3] = SumST;
|
|
M1elements_b1[4] = SumS2;
|
|
M1elements_b1[5] = SumS;
|
|
M1elements_b1[6] = SumT;
|
|
M1elements_b1[7] = SumS;
|
|
M1elements_b1[8] = numtocalc_reg;
|
|
|
|
}
|
|
else if (j == 2) {
|
|
beamFocusX_reg_b2 = 2.3548/sqrt(2*p);
|
|
beamPosX_reg_b2 = -ABC(1)/ ABC(0);
|
|
beamPeakX_reg_b2 = b;
|
|
|
|
beamRsqr_b2 = SumYYP/SumYYM;
|
|
beamSkewX_b2 = gsl_stats_wskew_m_sd(signal_reg,1,channellist_reg,1,numtocalc_reg,beamPosX_reg_b2,beamFocusX_reg_b2/2.3548); //skewness (symmetry)
|
|
beamKurtX_b2 = gsl_stats_wkurtosis_m_sd(signal_reg,1,channellist_reg,1,numtocalc_reg,beamPosX_reg_b2,beamFocusX_reg_b2/2.3548); //excess kurtosis (well behaved tails)
|
|
|
|
M1elements_b2[0] = SumT2;
|
|
M1elements_b2[1] = SumST;
|
|
M1elements_b2[2] = SumT;
|
|
M1elements_b2[3] = SumST;
|
|
M1elements_b2[4] = SumS2;
|
|
M1elements_b2[5] = SumS;
|
|
M1elements_b2[6] = SumT;
|
|
M1elements_b2[7] = SumS;
|
|
M1elements_b2[8] = numtocalc_reg;
|
|
}
|
|
else if (j == 3) {
|
|
beamFocusX_reg_b3 = 2.3548/sqrt(2*p);
|
|
beamPosX_reg_b3 = -ABC(1)/ ABC(0);
|
|
beamPeakX_reg_b3 = b;
|
|
beamRsqr_b3 = SumYYP/SumYYM;
|
|
beamSkewX_b3 = gsl_stats_wskew_m_sd(signal_reg,1,channellist_reg,1,numtocalc_reg,beamPosX_reg_b3,beamFocusX_reg_b3/2.3548); //skewness (symmetry)
|
|
beamKurtX_b3 = gsl_stats_wkurtosis_m_sd(signal_reg,1,channellist_reg,1,numtocalc_reg,beamPosX_reg_b3,beamFocusX_reg_b3/2.3548); //excess kurtosis (well behaved tails)
|
|
|
|
M1elements_b0[0] = SumT2;
|
|
M1elements_b3[1] = SumST;
|
|
M1elements_b3[2] = SumT;
|
|
M1elements_b3[3] = SumST;
|
|
M1elements_b3[4] = SumS2;
|
|
M1elements_b3[5] = SumS;
|
|
M1elements_b3[6] = SumT;
|
|
M1elements_b3[7] = SumS;
|
|
M1elements_b3[8] = numtocalc_reg;
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
}
|
|
}
|
|
else if (numtocalc_b0>0&&numtocalc_b1>0) {
|
|
|
|
|
|
beamPosX_reg_b0 = gsl_stats_wmean(signal_gsl_b0,1,channellist_gsl_b0,1,numtocalc_b0); //calculate the weighted mean
|
|
beamFocusX_reg_b0 = gsl_stats_wsd_with_fixed_mean(signal_gsl_b0,1,channellist_gsl_b0,1,numtocalc_b0,beamPosX_reg_b0); //Standard Deviation
|
|
beamFocusX_reg_b0 *=2.3548;//SD-->FWHM
|
|
|
|
beamPosX_reg_b1 = gsl_stats_wmean(signal_gsl_b1,1,channellist_gsl_b1,1,numtocalc_b1); //calculate the weighted mean
|
|
beamFocusX_reg_b1 = gsl_stats_wsd_with_fixed_mean(signal_gsl_b1,1,channellist_gsl_b1,1,numtocalc_b1,beamPosX_reg_b1); //Standard Deviation
|
|
beamNumX_b1 = numtocalc_b1;
|
|
beamFocusX_reg_b1 *=2.3548;//SD-->FWHM
|
|
|
|
beamPosX_reg_b2 = gsl_stats_wmean(signal_gsl_b2,1,channellist_gsl_b2,1,numtocalc_b2); //calculate the weighted mean
|
|
beamFocusX_reg_b2 = gsl_stats_wsd_with_fixed_mean(signal_gsl_b2,1,channellist_gsl_b2,1,numtocalc_b2,beamPosX_reg_b2); //Standard Deviation
|
|
beamNumX_b2 = numtocalc_b2;
|
|
beamFocusX_reg_b2 *=2.3548;//SD-->FWHM
|
|
|
|
beamPosX_reg_b3 = gsl_stats_wmean(signal_gsl_b3,1,channellist_gsl_b3,1,numtocalc_b3); //calculate the weighted mean
|
|
beamFocusX_reg_b3 = gsl_stats_wsd_with_fixed_mean(signal_gsl_b3,1,channellist_gsl_b3,1,numtocalc_b3,beamPosX_reg_b3); //Standard Deviation
|
|
beamNumX_b3 = numtocalc_b3;
|
|
beamFocusX_reg_b3 *=2.3548;//SD-->FWHM
|
|
|
|
beamRsqr_b0 = .0;
|
|
beamRsqr_b1 = .0;
|
|
beamRsqr_b2 = .0;
|
|
beamRsqr_b3 = .0;
|
|
|
|
}
|
|
else
|
|
{
|
|
beamFocusX_reg_b0 = 0.;
|
|
beamFocusX_reg_b1 = 0.;
|
|
beamFocusX_reg_b1 = 0.;
|
|
beamFocusX_reg_b1 = 0.;
|
|
beamPosX_reg_b0 = 0.;
|
|
beamPosX_reg_b1 = 0.;
|
|
beamPosX_reg_b2 = 0.;
|
|
beamPosX_reg_b3 = 0.;
|
|
beamRsqr_b0 = .0;
|
|
beamRsqr_b1 = .0;
|
|
beamRsqr_b2 = .0;
|
|
beamRsqr_b3 = .0;
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
rootTree->Fill();
|
|
|
|
|
|
|
|
}
|
|
if (frameend>0 && frame+framestart>=frameend) break;
|
|
}//end of loop over frames
|
|
|
|
|
|
|
|
graph_bkg_b0->SetName("graph_bkg_b0"); // graph_bkg_b0->Write();
|
|
graph_bkg_b1->SetName("graph_bkg_b1"); // graph_bkg_b1->Write();
|
|
graph_bkg_b2->SetName("graph_bkg_b2"); // graph_bkg_b2->Write();
|
|
graph_bkg_b3->SetName("graph_bkg_b3"); // graph_bkg_b3->Write();
|
|
|
|
// bic1->Fill();
|
|
// bmw1_posx->Fill();
|
|
//bmw1_posy->Fill();
|
|
|
|
///make reduced signal graph.
|
|
|
|
for (int jjj = 0; jjj<23;jjj++) {
|
|
// beamSignal_cor_b0_mean[jjj] = h_beamSignal_cor_b0[jjj]->GetMean();
|
|
// beamSignal_cor_b1_mean[jjj] = h_beamSignal_cor_b1[jjj]->GetMean();
|
|
// beamSignal_cor_b2_mean[jjj] = h_beamSignal_cor_b2[jjj]->GetMean();
|
|
// beamSignal_cor_b3_mean[jjj] = h_beamSignal_cor_b3[jjj]->GetMean();
|
|
|
|
//// get the median (0.5 quantile)
|
|
q = 0.5; // 0.5 for "median"
|
|
|
|
|
|
|
|
|
|
if (ionsort==3){
|
|
//protons
|
|
energy = energy_list_p[ jjj];
|
|
intensity = intensity_list_p[ int(intensity_index) ];
|
|
sp_air = f_sp_air->Eval(energy)*(intensity/1.0E6);
|
|
sp_ps = f_sp_ps->Eval(energy)*(intensity/1.0E6);
|
|
sp2_air = f_sp_air->Eval(energy);
|
|
sp2_ps = f_sp_ps->Eval(energy);
|
|
lorentz_gamma = energy/938.272 +1.; // lorentz_gamma = E_u/M_u +1
|
|
mybeta = sqrt(1. - 1./(lorentz_gamma*lorentz_gamma));
|
|
zsqr = 1.;
|
|
}
|
|
else if (ionsort==1){
|
|
//helium
|
|
energy = energy_list_he[ jjj ];
|
|
intensity = intensity_list_he[ int(intensity_index) ];
|
|
sp_air = f_h2sp_air->Eval(energy)*(intensity/1.0E6);
|
|
sp_ps = f_h2sp_ps->Eval(energy)*(intensity/1.0E6);
|
|
sp2_air = f_h2sp_air->Eval(energy);
|
|
sp2_ps = f_h2sp_ps->Eval(energy);
|
|
lorentz_gamma = energy/932.1055 +1.;// lorentz_gamma = E_u/M_u +1
|
|
mybeta = sqrt(1. - 1./(lorentz_gamma*lorentz_gamma));
|
|
zsqr = 4.;
|
|
|
|
}
|
|
else if (ionsort==4){
|
|
//carbon
|
|
energy = energy_list_c[ jjj];
|
|
intensity = intensity_list_c[ int(intensity_index) ];
|
|
|
|
sp_air = f_c12sp_air->Eval(energy)*(intensity/1.0E6);
|
|
sp_ps = f_c12sp_ps->Eval(energy)*(intensity/1.0E6);
|
|
sp2_air = f_c12sp_air->Eval(energy);
|
|
sp2_ps = f_c12sp_ps->Eval(energy);
|
|
lorentz_gamma = energy/932.3539 +1.;// lorentz_gamma = E_u/M_u +1
|
|
mybeta = sqrt(1. - 1./(lorentz_gamma*lorentz_gamma));
|
|
zsqr = 36.;
|
|
|
|
}
|
|
else if (ionsort==2){
|
|
//oxygen
|
|
energy = energy_list_o[ jjj];
|
|
intensity = intensity_list_o[ int(intensity_index) ];
|
|
sp_air = f_o16sp_air->Eval(energy)*(intensity/1.0E6);
|
|
sp_ps = f_o16sp_ps->Eval(energy)*(intensity/1.0E6);
|
|
sp2_air = f_o16sp_air->Eval(energy);
|
|
sp2_ps = f_o16sp_ps->Eval(energy);
|
|
lorentz_gamma = energy/931.4418 +1.;// lorentz_gamma = E_u/M_u +1
|
|
mybeta = sqrt(1. - 1./(lorentz_gamma*lorentz_gamma));
|
|
zsqr = 64.;
|
|
|
|
}
|
|
else {
|
|
sp_air = -1.;
|
|
sp_ps = -1.;
|
|
sp2_air = -1.;
|
|
sp2_ps = -1.;
|
|
lorentz_gamma = 0.;
|
|
mybeta = 0.;
|
|
zsqr = -1.;
|
|
|
|
}
|
|
|
|
h_beamSignal_ic1[jjj]->ComputeIntegral(); //just a precaution
|
|
h_beamSignal_ic1[jjj]->GetQuantiles(1,&median, &q);
|
|
//median = h_beamSignal_ic1[jjj]->GetMean();
|
|
// intcorr = (Intensity /19.8E6) / (totalcurrent/sp2_air/totaltime);
|
|
if (median>0&&energy>0) {intcorr = (intensity / 19.8E6) / (median/sp2_air)/ 3.11;}
|
|
|
|
// else if (median>0&&energy>0) {intcorr = 0.; median = 0.;}
|
|
else {intcorr = 0.; median = 0.;}
|
|
|
|
cout << "energy: " << energy << endl;
|
|
cout << "intensity: " << intensity << endl;
|
|
cout << "sp2_air: " << sp2_air << endl;
|
|
cout << "median: " << median << endl;
|
|
cout << "intcorr: " << intcorr << endl;
|
|
|
|
mybeta_graph[jjj] = sqrt(1. - 1./(lorentz_gamma*lorentz_gamma));
|
|
|
|
|
|
h_beamSignal_b0[jjj]->ComputeIntegral(); //just a precaution
|
|
h_beamSignal_b0[jjj]->GetQuantiles(1,&median, &q);
|
|
beamSignal_cor_b0_mean[jjj] = median*intcorr /(intensity/1.E6)/sp2_ps;
|
|
//beamSignal_cor_b0_mean[jjj] = h_beamSignal_b0[jjj]->GetMean()*intcorr /(intensity/1.E6)/sp2_ps;
|
|
cout << beamSignal_cor_b0_mean[jjj] << endl;
|
|
|
|
h_beamSignal_b1[jjj]->ComputeIntegral(); //just a precaution
|
|
h_beamSignal_b1[jjj]->GetQuantiles(1,&median, &q);
|
|
beamSignal_cor_b1_mean[jjj] = median*intcorr /(intensity/1.E6)/sp2_ps;
|
|
//beamSignal_cor_b1_mean[jjj] = h_beamSignal_b1[jjj]->GetMean()*intcorr /(intensity/1.E6)/sp2_ps;
|
|
|
|
h_beamSignal_b2[jjj]->ComputeIntegral(); //just a precaution
|
|
h_beamSignal_b2[jjj]->GetQuantiles(1,&median, &q);
|
|
beamSignal_cor_b2_mean[jjj] = median*intcorr /(intensity/1.E6)/sp2_ps;
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// beamSignal_cor_b2_mean[jjj] = h_beamSignal_b2[jjj]->GetMean()*intcorr /(intensity/1.E6)/sp2_ps;
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h_beamSignal_b3[jjj]->ComputeIntegral(); //just a precaution
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h_beamSignal_b3[jjj]->GetQuantiles(1,&median, &q);
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beamSignal_cor_b3_mean[jjj] = median*intcorr /(intensity/1.E6)/sp2_ps;
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//beamSignal_cor_b3_mean[jjj] = h_beamSignal_b3[jjj]->GetMean()*intcorr /(intensity/1.E6)/sp2_ps;
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}
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TGraph * graph_b0 = new TGraph(23,mybeta_graph, beamSignal_cor_b0_mean);
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TGraph * graph_b1 = new TGraph(23,mybeta_graph, beamSignal_cor_b1_mean);
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TGraph * graph_b2 = new TGraph(23,mybeta_graph, beamSignal_cor_b2_mean);
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TGraph * graph_b3 = new TGraph(23,mybeta_graph, beamSignal_cor_b3_mean);
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graph_b0->SetName("graph_b0");graph_b0->Write();
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graph_b1->SetName("graph_b1");graph_b1->Write();
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graph_b2->SetName("graph_b2");graph_b2->Write();
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graph_b3->SetName("graph_b3");graph_b3->Write();
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|
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rootFile->Write();
|
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rootFile->Close();
|
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}
|
|
std::cout << eventID << " frames analysed." << std::endl;
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return 0;
|
|
}
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else {
|
|
std::cerr << "Error 1" << std::endl;
|
|
return 1;
|
|
}
|
|
|
|
}
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|
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int main(int argc, char **argv){
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analyse(argc, argv);
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}
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