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375 lines
14 KiB
375 lines
14 KiB
#include <string.h>
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#include <stdio.h>
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#include <iostream>
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#include <vector>
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#include <utility>
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#include <TFile.h>
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#include <TTree.h>
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#include <TSystemDirectory.h>
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#include <string.h>
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#include <TFile.h>
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#include <TTree.h>
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#include <TH1.h>
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#include <TH2.h>
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#include <TNtuple.h>
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#include <iostream>
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#include <fstream>
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#include <TRandom.h>
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#include <TROOT.h>
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#include <algorithm>
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#include <assert.h>
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#include <math.h>
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#include <stdlib.h>
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#include <time.h>
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#include <sys/time.h>
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#include <TCanvas.h>
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#include <TF1.h>
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#include <TProfile.h>
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#include <TVectorD.h>
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#include <cstdlib>
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#include <cmath>
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#include <vector>
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#include <TApplication.h>
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using namespace std;
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int main(int argc, char **argv)
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{
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// Working directories
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const char *dirname = "/work/leverington/beamprofilemonitor/hitdata/HIT_26-11-2016/with_timestamp/";
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const char *listfile = NULL;
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int ion = atoi(argv[1]);
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if (ion==1) {listfile = "energylist_p";}
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else if (ion==2) {listfile = "energylist_he";}
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else if (ion==3) {listfile = "energylist_c";}
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else if (ion==4) {listfile = "energylist_o";}
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else {cerr<< argv[1] << " not allowed" << endl;
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cerr << "specify (1, 2, 3, or 4) for p, He4, C12, or O16" << endl;
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return 1;
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}
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ifstream in;
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ofstream ic1energyfile,ic2energyfile, beamenergyfile,beamenergyfile_iccorr, noisefile, focusfile,focusHITfile, skewfile, kurtfile,focusFitfile,chi2Fitfile;
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ofstream beamenergyfile_beta, peakFitfile;
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TFile *f;
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TTree *tree;
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Int_t nfiles = 0;
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Int_t EList = 0;
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Double_t Energy = 0.;
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Double_t F1 = 0.;
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Double_t Intensity = 0.;
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Double_t SP = 0.;
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char Filename[50];
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Int_t id = 0;
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Double_t signalmean = 0.;
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Double_t signalmeanerror = 0.;
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Double_t signalmean_corr = 0.;
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Double_t signalmeanerror_corr = 0.;
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Double_t signalmean_offsetcorr = 0.;
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Double_t signalmeanerror_offsetcorr = 0.;
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Double_t ic1mean = 0.;
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Double_t ic1meanerror = 0.;
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Double_t ic2mean = 0.;
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Double_t ic2meanerror = 0.;
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Double_t sp_air = 0.;
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Double_t sp_ps = 0.;
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Double_t sp2_air = 0.;
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Double_t sp2_ps = 0.;
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Double_t ic_beam_ratio = 0.;
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Double_t ic_beam_ratioerror = 0.;
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Double_t totalcurrent = 0.;
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Double_t totaltime = 0.;
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Double_t intcorr = 0.;
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Double_t icbpmcorrelation = 0.;
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Double_t noisemean = 0.;
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Double_t noiseRMS = 0.;
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Double_t focusmean = 0.;
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Double_t focusRMS = 0.;
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Double_t skewmean = 0.;
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Double_t skewRMS = 0.;
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Double_t kurtmean = 0.;
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Double_t kurtRMS = 0.;
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Double_t focusFitmean = 0.;
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Double_t focusFitRMS = 0.;
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Double_t chi2Fitmean = 0.;
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Double_t chi2FitRMS = 0.;
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Double_t peakFitmean = 0.;
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Double_t peakFitRMS = 0.;
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Double_t beta = 0.;
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Double_t gamma = 0.;
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Double_t zsqr = 0.;
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cout << "Trying to open"<< Form(": %s%s",dirname, listfile)<<"... " << endl;
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in.open(Form("%s%s.prn",dirname, listfile));
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ic1energyfile.open(Form("%s_ic1.txt",listfile ));
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ic2energyfile.open(Form("%s_ic1ratio.txt",listfile ));
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beamenergyfile.open(Form("%s_bpm1.txt",listfile ));
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beamenergyfile_beta.open(Form("%s_bpmbeta1.txt",listfile ));
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beamenergyfile_iccorr.open(Form("%s_bpm1ratio.txt",listfile ));
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noisefile.open(Form("%s_noise.txt",listfile ));
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focusfile.open(Form("%s_focus1.txt",listfile ));
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focusHITfile.open(Form("%s_focusHIT.txt",listfile ));
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skewfile.open(Form("%s_skew1.txt",listfile ));
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kurtfile.open(Form("%s_kurt1.txt",listfile ));
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focusFitfile.open(Form("%s_focusfit.txt",listfile ));
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chi2Fitfile.open(Form("%s_chi2fit.txt",listfile ));
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peakFitfile.open(Form("%s_peakfit.txt",listfile ));
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TF1 * f_sp_air = new TF1("f_sp_air","[0]*pow(x,[1])+[2]", 50, 250); //stopping power of protons in Air [MeV cm2 /g]
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f_sp_air->SetParameters(303.746, -0.873697,1.01335); //protons between 50 and 300 MeV
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TF1 * f_sp_ps = new TF1("f_sp_ps","[0]*pow(x,[1])+[2]", 50, 250); //stopping power of protons in polystyrene [MeV cm2 /g]
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f_sp_ps->SetParameters(361.936, -0.892255, 1.19133); //protons between 50 and 220 MeV
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TF1 * f_h2sp_air = new TF1("f_h2sp_air","[0]*pow(x,[1])+[2]", 50, 250); //stopping power of helium in air [MeV cm2 /g]
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f_h2sp_air->SetParameters(1236.51, -0.880225, 4.17041); //helium between 50 and 300 MeV
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TF1 * f_h2sp_ps = new TF1("f_h2sp_ps","[0]*pow(x,[1])+[2]", 50, 250); //stopping power of helium in polystyrene [MeV cm2 /g]
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f_h2sp_ps->SetParameters(1387.08, -0.882686,4.60833); //heelium between 50 and 300 MeV
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TF1 * f_c12sp_air = new TF1("f_c12sp_air","[0]*pow(x,[1])+[2]", 80, 480); //stopping power of carbon in air [MeV cm2 /g]
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f_c12sp_air->SetParameters(13291.2, -0.925464,45.3876); //carbon between 80 and 480 MeV
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TF1 * f_c12sp_ps = new TF1("f_c12sp_ps","[0]*pow(x,[1])+[2]", 80, 480); //stopping power of carbon in polystyrene [MeV cm2 /g]
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f_c12sp_ps->SetParameters(14538.9, -0.922423,49.2859); //carbon between 80 and 480 MeV
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TF1 * f_o16sp_air = new TF1("f_o16sp_air","[0]*pow(x,[1])+[2]", 80, 480); //stopping power of oxygen in air [MeV cm2 /g]
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f_o16sp_air->SetParameters(24624.9, -0.925425,80.6828); //oxygen between 80 and 480 MeV
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TF1 * f_o16sp_ps = new TF1("f_o16sp_ps","[0]*pow(x,[1])+[2]", 80,480); //stopping power of oxygen in polystyrene [MeV cm2 /g]
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f_o16sp_ps->SetParameters(26465.6, -0.928309,88.6728); //oxygen between 80 and 480 MeV
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///// ic1/SP intensity correction factor = 19.8E6+/-0.1E6 particles/s per nA/(Mevcm2/g)
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if (!in) {
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cout << Form("%s%s",dirname, listfile) << " not found." << endl;
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return 0;}
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cout << Form("%s%s",dirname, listfile) << " opened." << endl;
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in >> EList >> Energy >> F1 >> Intensity >> SP >> Filename >> id;//prime the while loop
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while (!in.eof()) {
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TFile * file = TFile::Open(Form("%s%s",dirname,Filename));
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TFile * outfile = TFile::Open(Form("plots/%s_plots",Filename),"RECREATE");
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cout << Filename << endl;
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// TH1D* signalDist = 0;
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// file->GetObject("signalDist",signalDist);
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// signalmean = signalDist->GetMean();
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// signalmeanerror = signalDist->GetMeanError();
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// cout << signalmean << " " << signalmeanerror << endl;
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// delete signalDist;
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// TCanvas *c1 = new TCanvas("c1");
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TTree *data;
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file->GetObject("newdata", data);
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TH2D *h_beamSignal_channel = (TH2D*)file->Get("th2d_beamSignal_channel");
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TH2D *h_bkg_channel = (TH2D*)file->Get("th2d_bkg_channel");
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noisemean = h_bkg_channel->GetMean(2);
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noiseRMS = h_bkg_channel->GetRMS(2);
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TVectorD *v = (TVectorD*)file->Get("icinfo");
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// v->Print();
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totalcurrent = (*v)[0];
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totaltime = (*v)[1];
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// data->Print();
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TH1D* h_beamSignal_1 = new TH1D("h_beamSignal_1","h_beamSignal_1",510,-500,50000);
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TH1D* h_ic1_1 = new TH1D("h_ic1_1","h_ic1_1",510,-50,500);
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TH1D* h_ic2_1 = new TH1D("h_ic2_1","h_ic2_1",510,-50,500);
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TH1D* h_ic_beam_ratio = new TH1D("h_ic_beam_ratio","h_ic_beam_ratio",500,0,500.);
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TH2D* h_beamSignal_v_ic = new TH2D("h_beamSignal_v_ic","h_beamSignal_v_ic",510,-50,500,510,-500,50000);
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TH1D* h_beamFocusX_1 = new TH1D("h_beamFocusX_1","h_beamFocusX_1",200,0,50.);
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TH1D* h_beamSkewX_1 = new TH1D("h_beamSkewX_1","h_beamSkewX_1",200,-10,10.);
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TH1D* h_beamKurtX_1 = new TH1D("h_beamKurtX_1","h_beamKurtX_1",200,-10,10.);
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TH1D* h_beamFocusX_fit = new TH1D("h_beamFocusX_fit","h_beamFocusX_fit",200,0,50.);
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TH1D* h_beamChi2_fit = new TH1D("h_beamChi2_fit","h_beamChi2_fit",200,0,50.);
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TH1D* h_beamPeakX_fit = new TH1D("h_beamPeakX_fit","h_beamPeakX_fit",1000,0,8000.);
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if (id>=0&&id<=26){
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//protons
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sp_air = f_sp_air->Eval(Energy)*(Intensity/1.0E6);
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sp_ps = f_sp_ps->Eval(Energy)*(Intensity/1.0E6);
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sp2_air = f_sp_air->Eval(Energy);
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sp2_ps = f_sp_ps->Eval(Energy);
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gamma = Energy/938.272 +1.; // gamma = E_u/M_u +1
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beta = sqrt(1. - 1./(gamma*gamma));
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zsqr = 1.;
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}
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else if (id>=27&&id<=52){
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//helium
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sp_air = f_h2sp_air->Eval(Energy)*(Intensity/1.0E6);
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sp_ps = f_h2sp_ps->Eval(Energy)*(Intensity/1.0E6);
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sp2_air = f_h2sp_air->Eval(Energy);
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sp2_ps = f_h2sp_ps->Eval(Energy);
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gamma = Energy/932.1055 +1.;// gamma = E_u/M_u +1
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beta = sqrt(1. - 1./(gamma*gamma));
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zsqr = 4.;
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}
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else if (id>=53&&id<=78){
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//carbon
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sp_air = f_c12sp_air->Eval(Energy)*(Intensity/1.0E6);
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sp_ps = f_c12sp_ps->Eval(Energy)*(Intensity/1.0E6);
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sp2_air = f_c12sp_air->Eval(Energy);
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sp2_ps = f_c12sp_ps->Eval(Energy);
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gamma = Energy/932.3539 +1.;// gamma = E_u/M_u +1
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beta = sqrt(1. - 1./(gamma*gamma));
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zsqr = 36.;
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}
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else if (id>=79&&id<=99){
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//oxygen
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sp_air = f_o16sp_air->Eval(Energy)*(Intensity/1.0E6);
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sp_ps = f_o16sp_ps->Eval(Energy)*(Intensity/1.0E6);
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sp2_air = f_o16sp_air->Eval(Energy);
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sp2_ps = f_o16sp_ps->Eval(Energy);
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gamma = Energy/931.4418 +1.;// gamma = E_u/M_u +1
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beta = sqrt(1. - 1./(gamma*gamma));
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zsqr = 64.;
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}
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else {
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sp_air = -1.;
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sp_ps = -1.;
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sp2_air = -1.;
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sp2_ps = -1.;
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gamma = 0.;
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beta = 0.;
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zsqr = -1.;
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}
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// cout << Form("beamPeakX_fit*sqrt(2)*%F/2.3548",F1) << endl;
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// data->Project("h_beamSignal_1","beamSignal_1","beamon==1&&beamSignal_1>50");
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// data->Project("h_beamSignal_1", Form("beamPeakX_fit*sqrt(2)*%F/2.3548",F1) ,"beamon==1&&ic1_1>0.005&&beamChi2_fit<200&&beamPeakX_fit>20");
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data->Project("h_beamSignal_1", "beamPeakX_fit*sqrt(2)*beamFocusX_fit/2.3548" ,"beamon==1&&ic1_1>0.001&&beamChi2_fit<200&&beamPeakX_fit>20");
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data->Project("h_beamFocusX_1","beamFocusX_1","beamon==1&&ic1_1>0.005&&beamSignal_1>100");
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data->Project("h_beamSkewX_1","beamSkewX_1","beamon==1&&ic1_1>0.005&&beamSignal_1>100");
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data->Project("h_beamKurtX_1","beamKurtX_1","beamon==1&&ic1_1>0.005&&beamSignal_1>100");
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data->Project("h_beamFocusX_fit","beamFocusX_fit","beamon==1&&ic1_1>0.005&&beamChi2_fit<200&&beamPeakX_fit>20");
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data->Project("h_beamChi2_fit","beamChi2_fit","beamon==1&&ic1_1>0.005&&beamChi2_fit<200&&beamPeakX_fit>20");
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data->Project("h_beamPeakX_fit","beamPeakX_fit","beamon==1&&ic1_1>0.005&&beamChi2_fit<200&&beamPeakX_fit>20");
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focusmean = h_beamFocusX_1->GetMean();
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focusRMS = h_beamFocusX_1->GetRMS();
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skewmean = h_beamSkewX_1->GetMean();
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skewRMS = h_beamSkewX_1->GetMeanError();
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kurtmean = h_beamKurtX_1->GetMean();
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kurtRMS = h_beamKurtX_1->GetMeanError();
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focusFitmean = h_beamFocusX_fit->GetMean();
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focusFitRMS = h_beamFocusX_fit->GetRMS();
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chi2Fitmean = h_beamChi2_fit->GetMean();
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chi2FitRMS = h_beamChi2_fit->GetRMS();
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peakFitmean = h_beamPeakX_fit->GetMean();
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peakFitRMS = h_beamPeakX_fit->GetRMS();
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data->Project("h_ic1_1","ic1_1","ic1_1>0.01");
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data->Project("h_ic2_1","ic2_1","ic2_1>0.01");
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data->Project("h_beamSignal_v_ic","(beamPeakX_fit*sqrt(2)*beamFocusX_fit/2.3548):ic1_1","beamon==1&&ic1_1>0.005&&beamChi2_fit<200&&beamPeakX_fit>20");
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icbpmcorrelation = h_beamSignal_v_ic->GetCorrelationFactor();
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data->Project("h_ic_beam_ratio","(beamPeakX_fit*sqrt(2)*beamFocusX_fit/2.3548)/ic1_1","beamon==1&&ic1_1>0.005&&beamChi2_fit<200&&beamPeakX_fit>20");
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signalmean = h_beamSignal_1->GetMean();
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signalmeanerror = h_beamSignal_1->GetMeanError();
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ic1mean = h_ic1_1->GetMean();
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ic1meanerror = h_ic1_1->GetMeanError();
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ic2mean = h_ic2_1->GetMean();
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ic2meanerror = h_ic2_1->GetMeanError();
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ic_beam_ratio=h_ic_beam_ratio->GetMean();
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ic_beam_ratioerror=h_ic_beam_ratio->GetRMS();
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// intcorr = (Intensity /19.8E6) / (totalcurrent/sp2_air/totaltime);
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intcorr = (Intensity / 19.8E6) / (ic1mean/sp2_air)/ 3.11;
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cout << id << " " <<sp2_air << " " << ic1mean/sp2_air << " " << intcorr << endl;
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// cout << id <<" " << sp2_ps << " " <<signalmean/(Intensity/1.0E6)/(ic1mean/sp_air) << " " << signalmeanerror/(Intensity/1.0E6)/(ic1mean/sp_air) << endl;
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ic1energyfile << sp2_air << " " << ic1mean *intcorr/(Intensity/1.E6) << " " << (ic1meanerror/ic1mean + 0.01)*ic1mean*intcorr/(Intensity/1.E6) << " " << Filename << endl;
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// ic2energyfile << sp2_air << " " << ic2mean / (Intensity/1.0E6) / (0.659869 + 1.50842 * sp2_air) << " " << ic2meanerror/sp_air << " " << Filename << endl;
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beamenergyfile << sp2_ps << " " << signalmean*intcorr/(Intensity/1.E6) << " " << (signalmeanerror/signalmean + 0.01)*signalmean*intcorr/(Intensity/1.E6)<< endl;
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beamenergyfile_beta << beta << " " << signalmean*intcorr/(Intensity/1.E6)/sp2_ps << " " << (signalmeanerror/signalmean+0.01) * signalmean*intcorr/(Intensity/1.E6)/sp2_ps << endl;
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beamenergyfile_iccorr << sp2_ps << " " << (ic_beam_ratio*sp2_air/sp2_ps)/84.5 << " " << (ic_beam_ratioerror*sp2_air/sp2_ps)/84.5 << endl;
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ic2energyfile << sp2_air << " " << icbpmcorrelation << endl;
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noisefile << sp2_ps << " " << noisemean << " " << noiseRMS << endl;
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focusfile << sp2_ps << " " << focusmean*0.8 << " " << focusRMS*0.8 << endl;
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focusHITfile << sp2_ps << " " << F1 << endl;
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skewfile << sp2_ps << " " << skewmean << " " << skewRMS << endl;
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kurtfile << sp2_ps << " " << kurtmean << " " << kurtRMS << endl;
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focusFitfile << sp2_ps << " " << focusFitmean*0.8 << " " << focusFitRMS*0.8 << endl;
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chi2Fitfile << sp2_ps << " " << chi2Fitmean << " " << chi2FitRMS << endl;
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peakFitfile << sp2_ps << " " << peakFitmean << " " << peakFitRMS*0.8 << endl;
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// h_beamSignal_1->Draw("");
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// c1->SaveAs(Form("figs/h_beamsignal_%i.pdf",nfiles));
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// c1->Destructor();
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// f->Close();
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outfile->Write();
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outfile->Close();
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file->Close();
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in >> EList >> Energy >> F1 >> Intensity >> SP >> Filename >> id;
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// cout << EList << Energy << F1 << Intensity << SP << Filename << id << endl;
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nfiles++;
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}
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ic1energyfile.close();
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ic2energyfile.close();
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beamenergyfile.close();
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beamenergyfile_iccorr.close();
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beamenergyfile_beta.close();
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noisefile.close();
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focusfile.close();
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focusHITfile.close();
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skewfile.close();
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kurtfile.close();
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in.close();
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focusFitfile.close();
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chi2Fitfile.close();
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|
return 0;
|
|
}
|