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143 lines
2.9 KiB
143 lines
2.9 KiB
#include "hitreader.h"
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#include <string>
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#include <stdio.h>
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#include <iostream>
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#include <numeric>
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#include <vector>
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#include <algorithm> // std::count
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#include <utility>
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#include <TH2.h>
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#include <TF1.h>
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#include <TStyle.h>
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#include <TCanvas.h>
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#include <TFile.h>
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#include <TTree.h>
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#include <TSystemDirectory.h>
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#include <gsl/gsl_statistics.h>
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#include <math.h>
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#include <gsl/gsl_errno.h>
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#include <gsl/gsl_fft_complex.h>
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#include <TF1.h>
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#include <TGraphErrors.h>
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#include <gsl/gsl_sort.h>
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#include <TVector.h>
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#include "TStopwatch.h"
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#include "Math/MinimizerOptions.h"
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#include "TVirtualFitter.h"
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#include "TMatrixD.h"
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#include "TApplication.h"
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#include "TRint.h"
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#include "TSystem.h"
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#include "TMultiGraph.h"
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#include "TObject.h"
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#include <fstream>
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#include <iomanip> // std::setprecision
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//function declarations
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int analyse(int argc, char **argv);
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int opendatafiles(int argc, char ** argv);
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void histograms(int argc, char ** argv);
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double * timealign();
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int closedatafiles();
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int set_background_v2(int start_frame, int frames);
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void readethercat();
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//////global variables
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//opendatafiles
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long int fileframesize;
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char * filename;
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ifstream file;
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TFile *rootFile; //output root file
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TTree *rootTree;
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char * rootfilename;
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char * offsetfilename;
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ifstream offsetfile;
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ofstream outfile;
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char * ethercat_ts_filename;
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char * bpm_ts_filename;
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char * ethercat_ic1_filename;
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char * ethercat_ic2_filename;
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ifstream ethercat_ts_file, bpm_ts_file, ethercat_ic2_file, ethercat_ic1_file;;
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struct bpm_frame_v2 {
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double channel_amp[320];
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double channel_position[320];
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double avg_position;
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double avg_width;
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double integratedsignalamp;
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double maxchannel_amp;
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int maxchannel;
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int nrChannels;
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int board_number;
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int sma_state;
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};
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bpm_frame_v2 board_b[4];
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bpm_frame_v2 board_b_bkg[4];
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bpm_frame_v2 readboard(Fullframe frame, int boardnumber);
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int framestart = 0;
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struct beamRecon {
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double Position;
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double Focus;
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double Peak;
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double Rsqr;
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double Skew;
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double Kurtosis;
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double Sum;
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int n_channels;
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};
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struct ethercatdata{
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double ic1;
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double ic2;
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};
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ethercatdata ethercat;
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vector<double> vec_ic1;
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vector<double> vec_ic2;
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beamRecon beamreconstruction(bpm_frame_v2 frametoanalyse, double threshold);
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beamRecon BPMbeamrecon_0,BPMbeamrecon_1,BPMbeamrecon_2,BPMbeamrecon_3;
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beamRecon BPMbeamrecon_Zeroed;
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TGraph * board_graph = new TGraph(320);
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TF1 * beamrecon_function1 = new TF1("beamrecon_function1", "gaus(0)",0.,320.);
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class Channel{
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public:
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double amplitude;;
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double position;
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int chnumber;
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int last_neighbour;
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int next_neighbour;
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};
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bool CompareChannels(Channel A, Channel B);
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double avg ( vector<Channel> v );
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double variance ( vector<Channel> v , double mean );
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bool visualize = false;
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int eventID;
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////histograms
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TH2D * TH2D_b0_signal_vs_channel;
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TH2D * TH2D_b1_signal_vs_channel;
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TH2D * TH2D_b2_signal_vs_channel;
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TH2D * TH2D_b3_signal_vs_channel;
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