data analysis scripts
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
 
 
 
 

441 lines
11 KiB

//This is an object interface for reading HIT data files
//See HIT documentation for details and examples.
/*
.L hitreader.c
Hitdata data;
data.read(“my_file.da2”); //to load whole file at once – forget it! See below.
data.read(“my_file.da2”,1000,100,10) //to read 100 frames starting from frame 1000 and incrementing by 10 (i.e. frame 1000, 1010, 1020, ... 1990 will be read)
//Reading 10 000 frames is reasonable. Reading 100 000 frames made my VM beg for memory.
data.nrFrames //to see how many frames you have
data.frames[0].nrBoards //to see how many boards you had in the system
data.frames[0].boards[0].nrChannels //to see how many channels you have in board 0
data.frames[10].boards[0].data[100] //get signal value for frame 10, board 0, channel 100
data.frames[10].boards[0].syncframe.local_ctr //get the local synchro counter for frame 10, board 0
//same for .global_ctr, .sma_state, .dummy, .device_nr, .data_ok
*/
//*********************** Helper *************************
#include <fstream>
#include <iostream>
using namespace std;
//#define debug(str) std::cout << "HIT DEBUG: " << str << endl;
#define debug(str)
//*********************** Syncframe *************************
class Syncframe
{
public:
Syncframe()
{
debug("Syncframe()");
local_ctr = global_ctr = 0;
sma_state = dummy = 0;
device_nr = -1;
data_ok = 0;
};
~Syncframe()
{
debug("~Syncframe()");
};
int sizeInFile()
{
return 16;
};
int read(std::ifstream* file)
{
char buffer[16];
file->read(buffer,16);
if (file->fail())
return 0;
local_ctr = *(unsigned short*)(buffer+0);
global_ctr = *(unsigned short*)(buffer+2);
sma_state = *(unsigned short*)(buffer+4);
dummy = *(unsigned short*)(buffer+6);
device_nr = *(int*)(buffer+8);
data_ok = *(int*)(buffer+12);
std::cout << "Syncframe:" << local_ctr << " " << global_ctr << " " << sma_state << " " << dummy << " " << device_nr << " " << data_ok << std::endl;
return 1;
};
unsigned short local_ctr;
unsigned short global_ctr;
unsigned short sma_state;
unsigned short dummy;
int device_nr;
unsigned int data_ok;
};
//*********************** Sensorframe *************************
class Boardframe
{
public:
Boardframe(int nr_channels = 0)
{
debug("Boardframe()");
data = NULL;
resize (nr_channels);
};
Boardframe(const Boardframe& in)
{
debug("Boardframe(Boardframe&)");
data = NULL;
resize(in.nrChannels);
for (int i = 0; i < nrChannels; i++)
data[i] = in.data[i];
syncframe = in.syncframe;
};
Boardframe& operator=(const Boardframe& in)
{
debug("Boardframe::operator==");
resize(in.nrChannels);//creates an array called data of length nrChannels
for (int i = 0; i < nrChannels; i++)
data[i] = in.data[i];
syncframe = in.syncframe;
return *this;
};
~Boardframe()
{
debug("~Boardframe()");
if (data)
delete[] data;
};
void resize(int nr_channels)
{
if (data)
delete[] data;
nrChannels = nr_channels;
if (nrChannels)
data = new unsigned short[nrChannels];
else
data = NULL;
};
int sizeInFile()
{
std::cout << "boardframe.sizeInFile() = " << syncframe.sizeInFile() + nrChannels*2 << std::endl;
return syncframe.sizeInFile() + nrChannels*2;
};
int read(std::ifstream* file)
{
if (syncframe.read(file) == 0)//get the syncframe before the board data
return 0;
//I must be already resized at this point!
file->read((char*)data,2*nrChannels);
if (file->fail())
return 0;
std::cout<< "data[" << nrChannels << "]: ";
for (int i = 0;i<nrChannels;i++) std::cout << data[i] << " ";
std::cout << std::endl;
return 1;
};
unsigned short& operator[] (int index)
{
return data[index];
};
Syncframe syncframe;
int nrChannels;
unsigned short* data;
};
//*********************** Fullframe *************************
class Fullframe
{
public:
Fullframe(int nr_boards = 0)
{
debug("Fullframe()");
boards = NULL;
resize(nr_boards);
};
Fullframe(const Fullframe& in)
{
debug("Fullframe(Fullframe&)");
boards = NULL;
resize(in.nrBoards);
for (int i = 0; i < nrBoards; i++)
boards[i] = in.boards[i];
};
Fullframe& operator=(const Fullframe& in)
{
debug("Fullframe::operator==");
resize(in.nrBoards);
for (int i = 0; i < nrBoards; i++)
boards[i] = in.boards[i];
return *this;
};
~Fullframe()
{
debug("~Fullframe()");
if (boards)
delete[] boards;
};
void resize (int nr_boards)
{
if (boards)
delete[] boards;
nrBoards = nr_boards;
if (nrBoards)
boards = new Boardframe[nrBoards];
else
boards = NULL;
}
int sizeInFile()
{
if (boards){
std::cout << "Fullframe.sizeInFile() = " << 2 + nrBoards*2 + nrBoards * boards[0].sizeInFile() << std::endl;
// return 2 + nrBoards*2 + nrBoards * boards[0].sizeInFile();
//// boards[0].sizeInFile() returns 656 for every board...
return 2 + 4*2 + (16 + 320 * 2) + (16 + 128*2)*3; //1482
//board[3].sizeInFile should be zero. 1482 - 128*2;
}
else
return 0; //no boards, makes no sense...
};
int read(std::ifstream* file)
{
//Read number of boards
unsigned short nr_boards;
file->read((char*)&nr_boards,2);
if(file->fail()){
std::cerr << "File read failed." << std::endl;
return 0;
}
if (nr_boards!=4){
std::cerr << "Unrealistic number(!=) of boards to be read:"<< nr_boards << std::endl;
std::cerr << "Will try to resync frame." << std::endl;
for (int j = 0;j<741;j++){
file->read((char*)&nr_boards,2);
if (nr_boards==4) break;
}
if ( nr_boards!=4){
std::cerr << "Resync failed." << std::endl;
return 0;
}
}
//std::cout << " nr_boards: " << nr_boards << std::endl;
//Read channel counts
unsigned short* channel_counts = new unsigned short[nr_boards];
file->read((char*)channel_counts,nr_boards*2);
if (file->fail())
{
delete[] channel_counts;
return 0;
}
//Read board frames
resize(nr_boards);
for (int board_nr = 0; board_nr < nr_boards; board_nr++)
{
// std::cout << " channel_counts[" << board_nr << "]: "<< channel_counts[board_nr] << std::endl;
boards[board_nr].resize(channel_counts[board_nr]);
if (boards[board_nr].read(file) == 0)//read the board
{
delete[] channel_counts;
return 0;
}
}
delete[] channel_counts;
return 1;
};
int nrChannels()
{
int result = 0;
for (int board_nr = 0; board_nr < nrBoards; board_nr++)
result += boards[board_nr].nrChannels;
return result;
};
unsigned short& operator[] (int index)
{
for (int board_nr = 0; board_nr < nrBoards; board_nr++)
{
if (index >= boards[board_nr].nrChannels)
index -= boards[board_nr].nrChannels;
else
return boards[board_nr][index];
}
std::cerr << " ### Fullframe::operator[]: index out of range!" << std::endl;
// return (*NULL); //this will cause crash (intended).
return boards[nrBoards][index];
};
int nrBoards;
Boardframe* boards;
};
//*********************** Hitdata *************************
class Hitdata
{
public:
Hitdata(int nr_frames = 0)
{
frames = NULL;
resize(nr_frames);
};
Hitdata(const Hitdata& in)
{
frames = NULL;
resize(in.nrFrames);
for (int i = 0; i < nrFrames; i++)
frames[i] = in.frames[i];
};
Hitdata& operator=(const Hitdata& in)
{
resize(in.nrFrames);
for (int i = 0; i < nrFrames; i++)
frames[i] = in.frames[i];
return *this;
};
~Hitdata()
{
if (nrFrames)
delete[] frames;
};
void resize (int nr_frames)
{
if (nrFrames)
delete[] frames;
nrFrames = nr_frames;
if (nrFrames)
frames = new Fullframe[nrFrames];
else
frames = NULL;
};
//Read data from a given file.
//first_frame is the number of first frame to be read
//nr_frames is the maximum number of frames to be read
//-1 to read all of them
//increment allows you reading once every nth sample
//Return number of frames read or 0 in case of failure
int readFile(char* filename, int first_frame = 1, int nr_frames = -1, int increment = 1)
{
std::ifstream file;
//Open the file
file.open(filename, ios_base::in | ios_base::binary);
if (!file.is_open())
{
std::cerr << " ### Hitdata: File could not be open!" << std::endl;
return 0; //file could not be opened
}
//Read first record to find board configuration
Fullframe sampleframe;
if (sampleframe.read(&file) == 0)
{
std::cerr << " ### Hitdata: First frame could not be read!" << std::endl;
file.close();
return 0;
}
else {
std::cout << "Sample frame size (bytes): " << sampleframe.sizeInFile() << std::endl;
}
//Check file size
file.seekg(0, std::ios::beg);
std::streamsize fsize = file.tellg();
file.seekg(0, std::ios::end);
fsize = file.tellg() - fsize;
//Determine real frames to read
unsigned int max_frames = fsize / sampleframe.sizeInFile();
if ((max_frames == -1) || (max_frames < nr_frames))
nr_frames = max_frames;
std::cout << " Hitdata: Nr frames to be read: " << nr_frames << std::endl;
//Read!
// resize(nr_frames); //make an array of Fullframes called frames of size nr_frames
file.seekg(first_frame * sampleframe.sizeInFile(), std::ios::beg);
for (int frame_nr = first_frame; frame_nr < nr_frames; frame_nr++)
{
if ((frame_nr%10000) == 0)
std::cout << " Frame " << frame_nr << std::endl;
file.seekg((frame_nr*increment) * sampleframe.sizeInFile() , std::ios::beg);
if (file.eof()) {
std::cerr<< "end of file reached." << std::endl;
return frame_nr;
}
if ( sampleframe.read(&file) == 0) //read the next frame
{
std::cerr << " ### Hitdata: Frame " << frame_nr << " could not be read!" << std::endl;
file.close(); //read error, finish!
// frames = frame_nr; //Kinky! We decrease nr_frames, but the actual array size remains unchanged!
///???? I don't know what the above line does.
return frame_nr;
}
// std::cout << frames[frame_nr].nrBoards << std::endl;
}
//Finished
file.close();
return nr_frames;
};
Fullframe& operator[] (int index)
{
if (index < nrFrames)
return frames[index];
else
{
std::cerr << " ### Hitdata::operator[]: index out of range!" << std::endl;
// return (*NULL); //this will cause crash (intended).
return frames[index];
}
};
int nrFrames;
Fullframe* frames;
};