From d10b27df579edbb4ac6fe2c82b2b60889b63e72e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Renata=20Kopecn=C3=A1?= <kopecna@physi.uni-heidelberg.de>
Date: Thu, 27 Jan 2022 10:11:12 +0100
Subject: [PATCH] Update 'MCtruthmatching.cpp'

---
 MCtruthmatching.cpp.md | 42 ++++++++++++++++++++++++++----------------
 1 file changed, 26 insertions(+), 16 deletions(-)

diff --git a/MCtruthmatching.cpp.md b/MCtruthmatching.cpp.md
index 75444dd..8e641c0 100644
--- a/MCtruthmatching.cpp.md
+++ b/MCtruthmatching.cpp.md
@@ -1,11 +1,24 @@
 In this script, the MC truthmatching is executed. The script can check both the background category of the decay or perform true-ID based truthmatching. Since this had to be heavily optimized for the K+pi0 channel, the KShort part is obsolete, but in principle it should work.
 
 The corresponding classes are defined in [[TMsource.cpp|TMsource]]. **TODO** 
+
+
+## Table of Contents
+* [passGammas()](#passgammas)
+* [passAllTM()](#passalltm)
+* [MCtruth()](#mctruth)
+* [bool restore_from_backup](#bool-restore_from_backup)
+* [bool restore_allyears_from_backup](#bool-restore_allyears_from_backup)
+* [bool restore_all_from_backup](#bool-restore_all_from_backup)
+* [Int_t TruthMatchAllBkg](#int_t-truthmatchallbkg)
+* [Int_t TruthMatchAll](#int_t-truthmatchall)
+* [Int_t TruthMatchAllAll](#int_t-truthmatchallall)
+
+Created by [gh-md-toc](https://github.com/ekalinin/github-markdown-toc)
+
  
 ### passGammas()
-
 Checks the TRUEIDs of the gammas, including the (grand(grand))mother IDs.
-
 * **Parameters**
     * gamma1: gamma_IDs class of the first gamma
     * gamma2: gamma_IDs class of the second gamma
@@ -14,9 +27,8 @@ Checks the TRUEIDs of the gammas, including the (grand(grand))mother IDs.
     * K_star_plus_TM: Check whether the gamma TRUEID chain originates from a Kstar?
     * pi_zero_TM: Check whether the gamma TRUEID chain originates from a pi0?
     * gamma_TM: Check gamma TRUEID?
-    * gamma_TM_full: if true, don't check the gamma TRUEID chain, just return true
-    
-* **Result**\
+    * gamma_TM_full: if true, don't check the gamma TRUEID chain, just return true  
+* **Result**
 Returns a number from 1 to 6:
     * 1: Both gammas are actually gammas
     * 2: One gamma is gamma, one is converted
@@ -26,9 +38,7 @@ Returns a number from 1 to 6:
     * 6: Both gammas are random
     
 ### passAllTM()
-
 Checks the TRUEID decay chain, fills some mass histograms and returns whether the event is sucessfully truthmatched or not.
-
 * **Parameters**
     * B_plus: Bplus_IDs class of the Bplus 
     * K_star: K_star_IDs class of the Kstar
@@ -55,16 +65,13 @@ Checks the TRUEID decay chain, fills some mass histograms and returns whether th
     * pi_zero_TM: Check whether the TRUEID chain originates from a pi0?
     * pi_zero_full_TM: Check whether the TRUEID of pi0?
     * mu_TM: Check whether the TRUEID of muons is correct?
-    * J_psi_TM: Check whether the TRUEID chain originates from a Jpsi?
-    
+    * J_psi_TM: Check whether the TRUEID chain originates from a Jpsi?   
 * **Result**\
 Returns a boolean: passed (event is TMed) or not passed (event is not TMed)
 
 
 ### MCtruth()
-
 The meaning of the parameters is in [[BDTSelection.cpp|BDTSelection]]
-
 * **Parameters**
     * year
     * magnet
@@ -72,12 +79,11 @@ The meaning of the parameters is in [[BDTSelection.cpp|BDTSelection]]
     * PHSP
     * B0
     * K1
-    * Inc
-    
+    * Inc    
 * **Result**\
     * If everyhting is fine, returns 1, otherwise returns 0.
-### bool restore_from_backup
 
+### bool restore_from_backup
 * **Parameters**
     * string year = "2011"
     * string magnet = "down"
@@ -87,9 +93,9 @@ The meaning of the parameters is in [[BDTSelection.cpp|BDTSelection]]
     * bool K1 = false
     * bool Inc = false
 * **Return**
+    * 
 
 ### bool restore_allyears_from_backup
-
 * **Parameters**
     * int Run = 1
     * bool Reference = false
@@ -98,12 +104,13 @@ The meaning of the parameters is in [[BDTSelection.cpp|BDTSelection]]
     * bool K1 = false
     * bool Inc = false
 * **Return**
+    * 
 
 ### bool restore_all_from_backup
-
 * **Parameters**
     * 
 * **Return**
+    * 
 
 ### Int_t TruthMatchAllBkg
 
@@ -114,6 +121,7 @@ The meaning of the parameters is in [[BDTSelection.cpp|BDTSelection]]
     * bool K1 = false
     * bool Inc = false
 * **Return**
+    * 
 
 ### Int_t TruthMatchAll
 
@@ -122,9 +130,11 @@ The meaning of the parameters is in [[BDTSelection.cpp|BDTSelection]]
     * bool PHSP = false
     * Int_t Run = 1
 * **Return**
+    * 
 
 ### Int_t TruthMatchAllAll
 
 * **Parameters**
     * Int_t Run
 * **Return**
+    *