75 lines
2.9 KiB
Matlab
75 lines
2.9 KiB
Matlab
%% ===== BEC-Droplets Settings =====
|
|
options = struct();
|
|
|
|
% File / paths
|
|
options.folderPath = "//DyLabNAS/Data/StructuralPhaseTransition/2025/08/13/0062";
|
|
options.savefileName = 'BECToDroplets';
|
|
options.saveDirectory = "Z:/Users/Karthik/Data-Analyzer/+Scripts";
|
|
|
|
% Camera / imaging
|
|
options.cam = 5;
|
|
options.angle = 0;
|
|
options.center = [1420, 2050];
|
|
options.span = [200, 200];
|
|
options.fraction = [0.1, 0.1];
|
|
options.pixel_size = 5.86e-6; % in meters
|
|
options.magnification = 23.94;
|
|
options.removeFringes = false;
|
|
options.ImagingMode = 'HighIntensity';
|
|
options.PulseDuration = 5e-6; % in s
|
|
|
|
% Fourier analysis settings
|
|
% Radial Spectral Distribution
|
|
options.theta_min = deg2rad(0);
|
|
options.theta_max = deg2rad(180);
|
|
options.N_radial_bins = 500;
|
|
options.Radial_Sigma = 2;
|
|
options.Radial_WindowSize = 5; % odd number for centered moving avg
|
|
|
|
% Angular Spectral Distribution
|
|
options.k_min = 1.2771; % in μm⁻¹
|
|
options.k_max = 2.5541; % in μm⁻¹
|
|
options.N_angular_bins = 180;
|
|
options.Angular_Threshold = 75;
|
|
options.Angular_Sigma = 2;
|
|
options.Angular_WindowSize = 5;
|
|
options.zoom_size = 50; % zoomed-in region around center
|
|
|
|
% Scan parameter
|
|
options.scan_parameter = 'rot_mag_field';
|
|
|
|
if strcmp(options.savefileName, 'BECToDroplets')
|
|
options.scan_reference_values = [2.40, 2.39, 2.38, 2.37, 2.35, 2.34, 2.32, 2.30, 2.28, 2.26, 2.24, 2.22, 2.2, 2.15, 2.10, 2.05, 2, 1.95, 1.90, 1.85, 1.8];
|
|
options.titleString = 'BEC to Droplets';
|
|
elseif strcmp(options.savefileName, 'BECToStripes')
|
|
options.scan_reference_values = [2.45, 2.44, 2.43, 2.42, 2.4, 2.39, 2.38, 2.37, 2.36, 2.35, 2.34, 2.32, 2.3, 2.28, 2.25, 2.2, 2.15, 2.10, 2.0, 1.90, 1.8];
|
|
options.titleString = 'BEC to Stripes';
|
|
elseif strcmp(options.savefileName, 'DropletsToStripes')
|
|
options.scan_reference_values = [0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40];
|
|
options.titleString = 'Droplets to Stripes';
|
|
elseif strcmp(options.savefileName, 'StripesToDroplets')
|
|
options.scan_reference_values = fliplr([0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40]);
|
|
options.titleString = 'Stripes to Droplets';
|
|
end
|
|
|
|
% Flags
|
|
options.skipNormalization = true;
|
|
options.skipUnshuffling = false;
|
|
options.skipPreprocessing = true;
|
|
options.skipMasking = true;
|
|
options.skipIntensityThresholding = true;
|
|
options.skipBinarization = true;
|
|
options.skipMovieRender = true;
|
|
options.skipSaveFigures = true;
|
|
options.skipSaveOD = true;
|
|
options.skipLivePlot = false;
|
|
options.showProgressBar = true;
|
|
|
|
% Optional extras
|
|
options.font = 'Bahnschrift';
|
|
|
|
%%
|
|
[od_imgs, scan_parameter_values, file_list] = Helper.collectODImages(options);
|
|
|
|
%%
|
|
Analyzer.runInteractiveODImageViewer(od_imgs, scan_parameter_values, file_list, options); |