81 lines
2.9 KiB
Matlab
81 lines
2.9 KiB
Matlab
%% ===== BEC-Droplets-Stripes Settings =====
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% Specify data location to run analysis on
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dataSources = {
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struct('sequence', 'StructuralPhaseTransition', ...
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'date', '2025/08/16', ...
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'runs', [9]) % specify run numbers as a string in "" or just as a numeric value
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};
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options = struct();
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% File / paths
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options.baseDataFolder = '//DyLabNAS/Data';
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options.measurementName = 'DropletsToStripes';
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scriptFullPath = mfilename('fullpath');
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options.saveDirectory = fileparts(scriptFullPath);
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% Camera / imaging
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options.cam = 5;
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options.angle = 0;
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options.center = [1420, 2050];
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options.span = [200, 200];
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options.fraction = [0.1, 0.1];
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options.pixel_size = 5.86e-6; % in meters
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options.magnification = 24.6;
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options.removeFringes = false;
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options.ImagingMode = 'HighIntensity';
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options.PulseDuration = 5e-6; % in s
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% Fourier analysis settings
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options.theta_min = deg2rad(0);
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options.theta_max = deg2rad(180);
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options.N_radial_bins = 500;
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options.Radial_Sigma = 2;
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options.Radial_WindowSize = 5; % odd number
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options.k_min = 1.2771; % μm⁻¹
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options.k_max = 2.5541; % μm⁻¹
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options.N_angular_bins = 180;
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options.Angular_Threshold = 75;
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options.Angular_Sigma = 2;
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options.Angular_WindowSize = 5;
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options.zoom_size = 50;
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% Scan parameter
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options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
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switch options.measurementName
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case 'BECToDroplets'
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options.scan_reference_values = [2.40, 2.39, 2.38, 2.37, 2.35, 2.34, 2.32, 2.30, 2.28, 2.26, 2.24, 2.22, 2.2, 2.15, 2.10, 2.05, 2, 1.95, 1.90, 1.85, 1.8];
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options.titleString = 'BEC to Droplets';
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case 'BECToStripes'
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options.scan_reference_values = [2.45, 2.44, 2.43, 2.42, 2.4, 2.39, 2.38, 2.37, 2.36, 2.35, 2.34, 2.32, 2.3, 2.28, 2.25, 2.2, 2.15, 2.10, 2.0, 1.90, 1.8];
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options.titleString = 'BEC to Stripes';
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case 'DropletsToStripes'
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options.scan_reference_values = [0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40];
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options.titleString = 'Droplets to Stripes';
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case 'StripesToDroplets'
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options.scan_reference_values = fliplr([0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40]);
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options.titleString = 'Stripes to Droplets';
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end
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% Flags
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options.skipNormalization = false;
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options.skipUnshuffling = false;
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options.skipPreprocessing = true;
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options.skipMasking = true;
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options.skipIntensityThresholding = true;
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options.skipBinarization = true;
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options.skipSaveFigures = true;
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options.skipSaveData = false;
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options.skipSaveOD = true;
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options.skipLivePlot = false;
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options.showProgressBar = true;
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% Extras
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options.font = 'Bahnschrift';
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%% ===== Run Batch Analysis =====
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results_all = Helper.batchAnalyze(dataSources, options);
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