75 lines
3.0 KiB
Matlab
75 lines
3.0 KiB
Matlab
function results = performAnalysis(options)
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arguments
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options.scan_parameter (1,:) char
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options.scan_reference_values (1,:) double
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options.cam (1,1) double
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options.angle (1,1) double
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options.center (1,2) double
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options.span (1,2) double
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options.fraction (1,2) double
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options.ImagingMode (1,:) char
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options.PulseDuration (1,1) double
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options.removeFringes (1,1) logical
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options.skipUnshuffling (1,1) logical
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options.pixel_size (1,1) double
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options.magnification (1,1) double
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options.zoom_size (1,1) double
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options.N_angular_bins (1,1) double
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options.Angular_Threshold (1,1) double
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options.Angular_Sigma (1,1) double
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options.Angular_WindowSize (1,1) double
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options.theta_min (1,1) double
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options.theta_max (1,1) double
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options.N_radial_bins (1,1) double
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options.Radial_Sigma (1,1) double
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options.Radial_WindowSize (1,1) double
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options.k_min (1,1) double
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options.k_max (1,1) double
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options.skipPreprocessing (1,1) logical
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options.skipMasking (1,1) logical
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options.skipIntensityThresholding (1,1) logical
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options.skipBinarization (1,1) logical
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options.skipNormalization (1,1) logical
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options.skipLivePlot (1,1) logical
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options.skipSaveFigures (1,1) logical
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options.showProgressBar (1,1) logical
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options.measurementName (1,:) char
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options.folderPath (1,:) char
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options.baseDataFolder (1,:) char
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options.saveDirectory (1,:) char
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options.titleString (1,:) char
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options.font (1,:) char
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end
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% Collect OD images
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[od_imgs, scan_parameter_values, ~] = Helper.collectODImages(options);
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% Conduct spectral analysis
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fprintf('\nInitiating spectral analysis...\n');
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spectral_analysis_results = Analyzer.conductSpectralAnalysis(od_imgs, scan_parameter_values, options);
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N_shots = length(od_imgs);
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% Extract angular correlations
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full_g2_results = Analyzer.extractAutocorrelation(...
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spectral_analysis_results.theta_vals, ...
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spectral_analysis_results.angular_spectral_distribution, ...
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scan_parameter_values, N_shots, options.N_angular_bins);
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custom_g_results = Analyzer.extractCustomCorrelation(...
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spectral_analysis_results.angular_spectral_distribution, ...
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scan_parameter_values, N_shots, options.N_angular_bins);
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fprintf('\nSpectral analysis complete!\n');
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% PCA
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% Lattice Reconstruction
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% Package results into struct
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results = struct();
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results.spectral_analysis_results = spectral_analysis_results;
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results.full_g2_results = full_g2_results;
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results.custom_g_results = custom_g_results;
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end |