114 lines
4.5 KiB
Matlab
114 lines
4.5 KiB
Matlab
%% ===== BEC-Droplets Settings =====
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% Specify data location to run analysis on
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dataSources = {
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struct('sequence', 'Evaporative_Cooling', ...
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'date', '2025/08/13', ...
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'runs', [30]) % specify run numbers as a string in "" or just as a numeric value
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};
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options = struct();
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% File paths
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options.baseDataFolder = '//DyLabNAS/Data';
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options.FullODImagesFolder = 'E:/Data - Experiment/FullODImages/202508';
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options.measurementName = 'BECToDroplets';
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scriptFullPath = mfilename('fullpath');
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options.saveDirectory = fileparts(scriptFullPath);
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% Camera / imaging settings
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options.cam = 3; % 1 - ODT_1_Axis_Camera; 2 - ODT_2_Axis_Camera; 3 - Horizontal_Axis_Camera;, 4 - Vertical_Axis_Camera;
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options.angle = 0; % angle by which image will be rotated
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options.center = [840, 972];
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options.span = [100, 100];
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options.fraction = [0.1, 0.1];
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options.pixel_size = 5.86e-6; % in meters
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options.magnification = 2.2218;
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options.ImagingMode = 'LowIntensity';
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options.PulseDuration = 25e-6; % in s
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% Fourier analysis settings
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options.theta_min = deg2rad(0);
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options.theta_max = deg2rad(180);
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options.N_radial_bins = 500;
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options.Radial_Sigma = 2;
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options.Radial_WindowSize = 5; % odd number
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options.k_min = 1.2771; % μm⁻¹
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options.k_max = 2.5541; % μm⁻¹
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options.N_angular_bins = 180;
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options.Angular_Threshold = 75;
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options.Angular_Sigma = 2;
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options.Angular_WindowSize = 5;
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options.zoom_size = 50;
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% Flags
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options.skipUnshuffling = false;
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options.skipNormalization = false;
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options.skipFringeRemoval = true;
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options.skipPreprocessing = true;
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options.skipMasking = true;
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options.skipIntensityThresholding = true;
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options.skipBinarization = true;
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options.skipFullODImagesFolderUse = true;
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options.skipSaveData = false;
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options.skipSaveFigures = true;
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options.skipSaveProcessedOD = true;
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options.skipLivePlot = true;
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options.showProgressBar = true;
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% Extras
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options.font = 'Bahnschrift';
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switch options.measurementName
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case 'BECToDroplets'
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options.scan_parameter = 'z_offset';
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options.flipSortOrder = true;
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options.scanParameterUnits = 'gauss';
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options.titleString = 'BEC to Droplets';
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case 'BECToStripes'
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options.scan_parameter = 'rot_mag_field';
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options.flipSortOrder = true;
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options.scanParameterUnits = 'gauss';
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options.titleString = 'BEC to Stripes';
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case 'DropletsToStripes'
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options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
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options.flipSortOrder = false;
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options.scanParameterUnits = 'degrees';
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options.titleString = 'Droplets to Stripes';
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case 'StripesToDroplets'
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options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
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options.flipSortOrder = false;
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options.scanParameterUnits = 'degrees';
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options.titleString = 'Stripes to Droplets';
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end
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%% ===== Collect Images and Launch Viewer =====
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[options.selectedPath, options.folderPath] = Helper.selectDataSourcePath(dataSources, options);
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[od_imgs, scan_parameter_values, scan_reference_values, file_list] = Helper.collectODImages(options);
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%% Fit model and extract quantities
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% --- Specify model and quantities to extract ---
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model = FitModels.DensityProfileBEC2DModel();
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quantities = {'atom_number','condensate_fraction','temperature'};
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% --- Optional plotting configuration ---
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plotConfig = struct();
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plotConfig.fontName = 'Bahnschrift';
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plotConfig.figureTag = 'BatchBECViewer';
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plotConfig.bottomRowTitles = {'Condensed Atom Number','Condensate Fraction','Temperature'};
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plotConfig.bottomRowLabels = {'# (\times 10^4)','# (%)','# (nK)'};
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plotConfig.bottomRowUnits = [1e-4, 1e2, 1e9];
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% --- Extra parameters ---
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extraParams = struct();
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extraParams.ToF = 20e-3;
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% --- Run viewer ---
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results = Analyzer.runFitProgressViewer(od_imgs, model, quantities, plotConfig, extraParams);
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