function plotG2Cumulants(results, varargin) %% plotG2Cumulants % Author: Karthik % Date: 2025-09-12 % Version: 1.0 % % Description: % Plot first four cumulants of g²(θ) vs scan parameter % % Inputs: % img - original 2D image % patchProps - struct array from detectPatches % results - struct array from extractAndClassifyShapes % params - parameter struct % xStart, yStart - offsets for cropped regions % figTitle - title string (e.g., 'BayesOpt Candidate') % % Notes: % Optional notes, references. % --- Parse name-value pairs --- p = inputParser; addParameter(p, 'Title', 'g² Cumulants', @(x) ischar(x) || isstring(x)); addParameter(p, 'XLabel', 'Scan Parameter', @(x) ischar(x) || isstring(x)); addParameter(p, 'FontName', 'Arial', @ischar); addParameter(p, 'FontSize', 14, @isnumeric); addParameter(p, 'FigNum', [], @(x) isempty(x) || (isnumeric(x) && isscalar(x))); addParameter(p, 'SkipSaveFigures', false, @islogical); addParameter(p, 'SaveFileName', 'G2Cumulants.fig', @ischar); addParameter(p, 'SaveDirectory', pwd, @ischar); parse(p, varargin{:}); opts = p.Results; % --- Extract cumulant data from full distribution --- N_params = numel(results.g2_cumulants); N_theta = size(results.g2_cumulants{1},1); xvals = results.summaries.scanParamVal; kappa = zeros(N_theta, N_params, 4); % θ × scan × cumulant for i = 1:N_params cumul_mat = results.g2_cumulants{i}; % [N_theta × 4] kappa(:,i,:) = cumul_mat; end % --- Select specific theta indices: 0, pi/6, pi/3, pi/2, 2*pi/3, pi --- thetaVals = results.theta_values; % assume radians desiredTheta = [pi/12 pi/6 pi/3 pi/2 2*pi/3 5*pi/6]; [~, thIdx] = arrayfun(@(t) min(abs(thetaVals - t)), desiredTheta); % --- Legend labels --- thetaLabels = {'\pi/12','\pi/6','\pi/3','\pi/2','2\pi/3','5\pi/6'}; % --- Colormap (sky) --- cmap = Colormaps.coolwarm(numel(thIdx)); % --- Create figure --- if isempty(opts.FigNum), fig = figure; else, fig = figure(opts.FigNum); end clf(fig); set(fig,'Color','w','Position',[100 100 950 750]); t = tiledlayout(2,2,'TileSpacing','Compact','Padding','Compact'); title(t, opts.Title, 'FontName', opts.FontName, 'FontSize', opts.FontSize+4); cumulLabels = {'\kappa_1','\kappa_2','\kappa_3','\kappa_4'}; cumulTitles = {'Mean','Variance','Skewness','Binder Cumulant'}; for k = 1:4 ax = nexttile; hold(ax,'on'); for idx = 1:numel(thIdx) th = thIdx(idx); plot(ax, xvals, squeeze(kappa(th,:,k)), '-o', ... 'Color', cmap(idx,:), 'LineWidth', 2, 'MarkerSize', 8, 'MarkerFaceColor', cmap(idx,:)); end ylabel(ax, cumulLabels{k}, 'FontName', opts.FontName, 'FontSize', opts.FontSize); xlabel(ax, opts.XLabel, 'FontName', opts.FontName, 'FontSize', opts.FontSize); title(ax, cumulTitles{k}, 'FontName', opts.FontName, 'FontSize', opts.FontSize+2); grid(ax,'on'); set(ax,'FontName',opts.FontName,'FontSize',opts.FontSize); % --- Add legend --- legend(ax, thetaLabels, 'Location', 'best', 'FontSize', opts.FontSize-2); end % --- Save figure --- if ~opts.SkipSaveFigures if ~exist(opts.SaveDirectory,'dir'), mkdir(opts.SaveDirectory); end savefig(fig, fullfile(opts.SaveDirectory, opts.SaveFileName)); end end