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compare: karthik:a654bc342cb551a2bfb18705511ec541f33451cf
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2 Commits
22078fe934 ... a654bc342c

Author SHA1 Message Date
Karthik Chandrashekara
a654bc342c Adjusted parameters. 2025-09-05 11:17:31 +02:00
Karthik Chandrashekara
bca81f618f Revert "Minor corrections." 
This reverts commit 22078fe934.
 2025-09-05 11:15:15 +02:00
6 changed files with 16 additions and 22 deletions
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10
Data-Analyzer/+Scripts/BECToDroplets/runFullAnalysis.m
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@ -3,8 +3,8 @@
% Specify data location to run analysis on
dataSources = {
struct('sequence', 'StructuralPhaseTransition', ...
'date', '2025/07/25', ...
'runs', [25]) % specify run numbers as a string in "" or just as a numeric value
'date', '2025/08/13', ...
'runs', [62]) % specify run numbers as a string in "" or just as a numeric value
};
options = struct();
@ -23,7 +23,7 @@ options.center = [1420, 2050];
options.span = [200, 200];
options.fraction = [0.1, 0.1];
options.pixel_size = 5.86e-6; % in meters
options.magnification = 23.94;
options.magnification = 24.6;
options.ImagingMode = 'HighIntensity';
options.PulseDuration = 5e-6; % in s
@ -74,12 +74,12 @@ switch options.measurementName
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
options.flipSortOrder = true;
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
options.flipSortOrder = false;
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end

6
Data-Analyzer/+Scripts/BECToDropletsToStripes/plotAnalysisResults.m
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@ -38,12 +38,6 @@ options = datasetStruct.options;
options.font = 'Bahnschrift'; % override if needed
options.skipSaveFigures = false; % override if needed
%% ------------------ Create dataset-specific figure folder ------------------
figSaveDir = fullfile(baseDir,'Results', 'SavedFigures', datasetName);
if ~exist(figSaveDir, 'dir')
mkdir(figSaveDir);
end
%% ------------------ 1. Mean ± Std Plots ------------------
% Plot Radial Spectral Contrast
Plotter.plotMeanWithSE(scan_parameter_values, compiled_results.spectral_analysis_results.radial_spectral_contrast, ...

4
Data-Analyzer/+Scripts/BECToDropletsToStripes/runFullAnalysis.m
View File

@ -74,12 +74,12 @@ switch options.measurementName
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
options.flipSortOrder = true;
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
options.flipSortOrder = false;
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end

12
Data-Analyzer/+Scripts/BECToStripes/runFullAnalysis.m
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@ -3,15 +3,15 @@
% Specify data location to run analysis on
dataSources = {
struct('sequence', 'StructuralPhaseTransition', ...
'date', '2025/07/26', ...
'runs', [8]) % specify run numbers as a string in "" or just as a numeric value
'date', '2025/08/15', ...
'runs', [3]) % specify run numbers as a string in "" or just as a numeric value
};
options = struct();
% File paths
options.baseDataFolder = '//DyLabNAS/Data';
options.FullODImagesFolder = 'E:/Data - Experiment/FullODImages/202507';
options.FullODImagesFolder = 'E:/Data - Experiment/FullODImages/202508';
options.measurementName = 'BECToStripes';
scriptFullPath = mfilename('fullpath');
options.saveDirectory = fileparts(scriptFullPath);
@ -23,7 +23,7 @@ options.center = [1420, 2050];
options.span = [200, 200];
options.fraction = [0.1, 0.1];
options.pixel_size = 5.86e-6; % in meters
options.magnification = 23.94;
options.magnification = 24.6;
options.ImagingMode = 'HighIntensity';
options.PulseDuration = 5e-6; % in s
@ -74,12 +74,12 @@ switch options.measurementName
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
options.flipSortOrder = true;
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
options.flipSortOrder = false;
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end

2
Data-Analyzer/+Scripts/BECToStripesToDroplets/plotAnalysisResults.m
View File

@ -1,5 +1,5 @@
%% --- User chooses which dataset to load ---
datasetIdx = 6; % <-- change this to 1, 2, 3, ...
datasetIdx = 1; % <-- change this to 1, 2, 3, ...
datasetName = sprintf('Dataset_%d', datasetIdx);
% --- Base directory selection ---

4
Data-Analyzer/+Scripts/BECToStripesToDroplets/runFullAnalysis.m
View File

@ -74,12 +74,12 @@ switch options.measurementName
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
options.flipSortOrder = true;
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
options.flipSortOrder = false;
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end