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Added plotting of PCA results across scripts, minor cosmetic changes and bugfixes.

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Karthik 2025-08-25 22:29:02 +02:00
parent 3c407617a0
commit fb12be8e22
8 changed files with 32 additions and 8 deletions
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6
Data-Analyzer/+Plotter/plotPCAResults.m
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@ -23,10 +23,10 @@ function plotPCAResults(pcaResults, scan_parameter_values, scan_reference_values
score = pcaResults.score; score = pcaResults.score;
explained = pcaResults.explained; explained = pcaResults.explained;
raw_scan_param_vals = scan_parameter_values; raw_scan_param_vals = scan_parameter_values;
unique_scan_param_vals = scan_reference_values; unique_scan_param_vals = scan_reference_values;
numGroups = numel(unique_scan_param_vals); numGroups = numel(unique_scan_param_vals);
colors = lines(numGroups); colors = lines(numGroups);
% --- Figure numbering setup --- % --- Figure numbering setup ---
if isempty(opts.FigNumRange) if isempty(opts.FigNumRange)

2
Data-Analyzer/+Scripts/BECToDroplets/runFullAnalysis.m
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@ -70,7 +70,7 @@ options.skipBinarization = true;
options.skipSaveFigures = true; options.skipSaveFigures = true;
options.skipSaveData = false; options.skipSaveData = false;
options.skipSaveOD = true; options.skipSaveOD = true;
options.skipLivePlot = false; options.skipLivePlot = true;
options.showProgressBar = true; options.showProgressBar = true;
% Extras % Extras

10
Data-Analyzer/+Scripts/BECToDropletsToStripes/plotAnalysisResults.m
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@ -1,5 +1,5 @@
% --- User chooses which dataset to load --- % --- User chooses which dataset to load ---
datasetIdx = 1; % <-- change this to 1, 2, 3, ... datasetIdx = 6; % <-- change this to 1, 2, 3, ...
datasetName = sprintf('Dataset_%d', datasetIdx); datasetName = sprintf('Dataset_%d', datasetIdx);
% Detect the folder where this script is located and set that as the Base Directory % Detect the folder where this script is located and set that as the Base Directory
@ -107,6 +107,14 @@ Plotter.plotCumulants(options.scan_reference_values, ...
'SkipSaveFigures', options.skipSaveFigures, ... 'SkipSaveFigures', options.skipSaveFigures, ...
'SaveFileName', 'CumulantOfPeakOffsetAngularCorrelation.fig', ... 'SaveFileName', 'CumulantOfPeakOffsetAngularCorrelation.fig', ...
'SaveDirectory', figSaveDir); 'SaveDirectory', figSaveDir);
%% ------------------ 5. PCA ------------------
Plotter.plotPCAResults(compiled_results.pca_results, scan_parameter_values, options.scan_reference_values, ...
'FigNumRange', [7,8,9,10,11,12], ...
'FontName', options.font, ...
'SkipSaveFigures', options.skipSaveFigures, ...
'SaveDirectory', figSaveDir);
%{ %{
%% ------------------ 6. Average of Spectra Plots ------------------ %% ------------------ 6. Average of Spectra Plots ------------------

2
Data-Analyzer/+Scripts/BECToDropletsToStripes/runFullAnalysis.m
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@ -70,7 +70,7 @@ options.skipBinarization = true;
options.skipSaveFigures = true; options.skipSaveFigures = true;
options.skipSaveData = false; options.skipSaveData = false;
options.skipSaveOD = true; options.skipSaveOD = true;
options.skipLivePlot = false; options.skipLivePlot = true;
options.showProgressBar = true; options.showProgressBar = true;
% Extras % Extras

8
Data-Analyzer/+Scripts/BECToStripes/plotAnalysisResults.m
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@ -108,6 +108,14 @@ Plotter.plotCumulants(options.scan_reference_values, ...
'SkipSaveFigures', options.skipSaveFigures, ... 'SkipSaveFigures', options.skipSaveFigures, ...
'SaveFileName', 'CumulantOfPeakOffsetAngularCorrelation.fig', ... 'SaveFileName', 'CumulantOfPeakOffsetAngularCorrelation.fig', ...
'SaveDirectory', figSaveDir); 'SaveDirectory', figSaveDir);
%% ------------------ 5. PCA ------------------
Plotter.plotPCAResults(compiled_results.pca_results, scan_parameter_values, options.scan_reference_values, ...
'FigNumRange', [7,8,9,10,11,12], ...
'FontName', options.font, ...
'SkipSaveFigures', options.skipSaveFigures, ...
'SaveDirectory', figSaveDir);
%{ %{
%% ------------------ 6. Average of Spectra Plots ------------------ %% ------------------ 6. Average of Spectra Plots ------------------

2
Data-Analyzer/+Scripts/BECToStripes/runFullAnalysis.m
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@ -70,7 +70,7 @@ options.skipBinarization = true;
options.skipSaveFigures = true; options.skipSaveFigures = true;
options.skipSaveData = false; options.skipSaveData = false;
options.skipSaveOD = true; options.skipSaveOD = true;
options.skipLivePlot = false; options.skipLivePlot = true;
options.showProgressBar = true; options.showProgressBar = true;
% Extras % Extras

8
Data-Analyzer/+Scripts/BECToStripesToDroplets/plotAnalysisResults.m
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@ -108,6 +108,14 @@ Plotter.plotCumulants(options.scan_reference_values, ...
'SkipSaveFigures', options.skipSaveFigures, ... 'SkipSaveFigures', options.skipSaveFigures, ...
'SaveFileName', 'CumulantOfPeakOffsetAngularCorrelation.fig', ... 'SaveFileName', 'CumulantOfPeakOffsetAngularCorrelation.fig', ...
'SaveDirectory', figSaveDir); 'SaveDirectory', figSaveDir);
%% ------------------ 5. PCA ------------------
Plotter.plotPCAResults(compiled_results.pca_results, scan_parameter_values, options.scan_reference_values, ...
'FigNumRange', [7,8,9,10,11,12], ...
'FontName', options.font, ...
'SkipSaveFigures', options.skipSaveFigures, ...
'SaveDirectory', figSaveDir);
%{ %{
%% ------------------ 6. Average of Spectra Plots ------------------ %% ------------------ 6. Average of Spectra Plots ------------------

2
Data-Analyzer/+Scripts/BECToStripesToDroplets/runFullAnalysis.m
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@ -70,7 +70,7 @@ options.skipBinarization = true;
options.skipSaveFigures = true; options.skipSaveFigures = true;
options.skipSaveData = false; options.skipSaveData = false;
options.skipSaveOD = true; options.skipSaveOD = true;
options.skipLivePlot = false; options.skipLivePlot = true;
options.showProgressBar = true; options.showProgressBar = true;
% Extras % Extras