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Folder restructuring.

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This commit is contained in:
Karthik 2025-09-08 12:25:47 +02:00
parent 4d82c15331
commit f2c8fc9d94
2 changed files with 49 additions and 16 deletions
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21
Data-Analyzer/+Scripts/plotRawODImageGrid_DropletsToStripes.m → Data-Analyzer/+Scripts/BECToDropletsToStripes/plotODImageGrid.m
View File

@ -86,9 +86,9 @@ end
% ===== Collect Images and Launch Viewer =====
[options.selectedPath, options.folderPath] = Helper.selectDataSourcePath(dataSources, options);
[options.selectedPath, options.folderPath] = Helper.selectDataSourcePath(dataSources, options);
[od_imgs, scan_parameter_values, scan_reference_values, file_list] = Helper.collectODImages(options);
[od_imgs, scan_parameter_values, scan_reference_values, ~] = Helper.collectODImages(options);
% === Plot raw images ===
n_total = numel(scan_parameter_values);
@ -112,10 +112,21 @@ end
idxKeep = idxKeep(idxKeep>0);
scan_reference_values_plot = scan_reference_values(idxKeep);
od_imgs_plot = od_imgs(idxKeep);
nParamsPlot = numel(scan_reference_values_plot);
% === Collect ALL repetitions for each kept parameter ===
od_imgs_grouped = cell(nParamsPlot, 1);
for k = 1:nParamsPlot
paramVal = scan_reference_values_plot(k);
% Find all repetitions for this parameter value
repIdx = find(ismembertol(scan_parameter_values, paramVal, 1e-6));
% Store images + parameter values
od_imgs_grouped{k} = od_imgs(repIdx);
end
figure(101); clf;
set(gcf, 'Position', [100 100 950 750]);
@ -131,7 +142,7 @@ for r = 1:nRepsPlot
allAxes(r,j) = ax;
% Extract OD image for this scan parameter and repetition
od = od_imgs_plot{j};
od = od_imgs_grouped{j}{r};
imagesc(od, 'Parent', ax);
set(ax, 'YDir', 'normal');

44
Data-Analyzer/+Scripts/plotRawODImageGrid_BECToStripes.m → Data-Analyzer/+Scripts/BECToStripes/plotODImageGrid.m
View File

@ -86,9 +86,9 @@ end
% ===== Collect Images and Launch Viewer =====
[options.selectedPath, options.folderPath] = Helper.selectDataSourcePath(dataSources, options);
[options.selectedPath, options.folderPath] = Helper.selectDataSourcePath(dataSources, options);
[od_imgs, scan_parameter_values, scan_reference_values, file_list] = Helper.collectODImages(options);
[od_imgs, scan_parameter_values, scan_reference_values, ~] = Helper.collectODImages(options);
% === Plot raw images ===
n_total = numel(scan_parameter_values);
@ -112,10 +112,21 @@ end
idxKeep = idxKeep(idxKeep>0);
scan_reference_values_plot = scan_reference_values(idxKeep);
od_imgs_plot = od_imgs(idxKeep);
nParamsPlot = numel(scan_reference_values_plot);
% === Collect ALL repetitions for each kept parameter ===
od_imgs_grouped = cell(nParamsPlot, 1);
for k = 1:nParamsPlot
paramVal = scan_reference_values_plot(k);
% Find all repetitions for this parameter value
repIdx = find(ismembertol(scan_parameter_values, paramVal, 1e-6));
% Store images + parameter values
od_imgs_grouped{k} = od_imgs(repIdx);
end
figure(101); clf;
set(gcf, 'Position', [100 100 950 750]);
@ -131,7 +142,7 @@ for r = 1:nRepsPlot
allAxes(r,j) = ax;
% Extract OD image for this scan parameter and repetition
od = od_imgs_plot{j};
od = od_imgs_grouped{j}{r};
imagesc(od, 'Parent', ax);
set(ax, 'YDir', 'normal');
@ -270,9 +281,9 @@ end
% ===== Collect Images and Launch Viewer =====
[options.selectedPath, options.folderPath] = Helper.selectDataSourcePath(dataSources, options);
[options.selectedPath, options.folderPath] = Helper.selectDataSourcePath(dataSources, options);
[od_imgs, scan_parameter_values, scan_reference_values, file_list] = Helper.collectODImages(options);
[od_imgs, scan_parameter_values, scan_reference_values, ~] = Helper.collectODImages(options);
% === Plot raw images ===
n_total = numel(scan_parameter_values);
@ -296,11 +307,22 @@ end
idxKeep = idxKeep(idxKeep>0);
scan_reference_values_plot = scan_reference_values(idxKeep);
od_imgs_plot = od_imgs(idxKeep);
nParamsPlot = numel(scan_reference_values_plot);
figure(101); clf;
% === Collect ALL repetitions for each kept parameter ===
od_imgs_grouped = cell(nParamsPlot, 1);
for k = 1:nParamsPlot
paramVal = scan_reference_values_plot(k);
% Find all repetitions for this parameter value
repIdx = find(ismembertol(scan_parameter_values, paramVal, 1e-6));
% Store images + parameter values
od_imgs_grouped{k} = od_imgs(repIdx);
end
figure(102); clf;
set(gcf, 'Position', [100 100 950 750]);
% Rows = repetitions, Cols = selected scan parameter values
@ -315,7 +337,7 @@ for r = 1:nRepsPlot
allAxes(r,j) = ax;
% Extract OD image for this scan parameter and repetition
od = od_imgs_plot{j};
od = od_imgs_grouped{j}{r};
imagesc(od, 'Parent', ax);
set(ax, 'YDir', 'normal');