Added functionality to compute the modulated single Gaussian beam and did some other cleanup and refactoring.
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4336a657a4
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e7d2255ac9
@ -36,18 +36,23 @@ def find_nearest(array, value):
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idx = (np.abs(array - value)).argmin()
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return idx
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def arccos_modulation(mod_amp, n_points):
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phi = np.linspace(0, 2*np.pi, n_points)
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first_half = 2/np.pi * np.arccos(phi/np.pi-1) - 1
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second_half = np.flip(first_half)
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return mod_amp * np.concatenate((first_half, second_half))
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def modulation_function(mod_amp, n_points, func = 'arccos'):
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if func == 'arccos':
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phi = np.linspace(0, 2*np.pi, n_points)
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first_half = 2/np.pi * np.arccos(phi/np.pi-1) - 1
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second_half = np.flip(first_half)
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mod_func = mod_amp * np.concatenate((first_half, second_half))
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dx = (max(mod_func) - min(mod_func))/(2*n_points)
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return dx, mod_func
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else:
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return None
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#####################################################################
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# BEAM PARAMETERS #
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#####################################################################
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# Rayleigh range
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def z_R(w_0:np.ndarray, lamb:float)->np.ndarray:
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# Rayleigh length
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def z_R(w_0, lamb)->np.ndarray:
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return np.pi*w_0**2/lamb
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# Beam Radius
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@ -145,14 +150,17 @@ def harmonic_potential(pos, v, xoffset, yoffset, m = 164*u.u):
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U_Harmonic = ((0.5 * m * (2 * np.pi * v*u.Hz)**2 * (pos*u.um - xoffset*u.um)**2)/ac.k_B).to(u.uK) + yoffset*u.uK
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return U_Harmonic.value
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# def modulated_single_gaussian_beam_potential(positions: "np.ndarray|u.quantity.Quantity", waists: "np.ndarray|u.quantity.Quantity", alpha:"float|u.quantity.Quantity", P:"float|u.quantity.Quantity"=1, wavelength:"float|u.quantity.Quantity"=1.064*u.um)->np.ndarray:
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# mod_amp = 0.5 * waists[0]
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# n_points = int(len(positions[0,:])/2)
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# x_mod = arccos_modulation(mod_amp, n_points)
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# A = 2*P/(np.pi*w(positions[1,:], waists[0], wavelength)*w(positions[1,:], waists[1], wavelength))
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# U_tilde = (1 / (2 * ac.eps0 * ac.c)) * alpha * (4 * np.pi * ac.eps0 * ac.a0**3)
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# U = - U_tilde * A * np.trapz(np.exp(-2 * (np.subtract(x_mod, positions[0,:])/w(positions[1,:], waists[0], wavelength))**2))
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# return U
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def modulated_single_gaussian_beam_potential(positions: "np.ndarray|u.quantity.Quantity", waists: "np.ndarray|u.quantity.Quantity", alpha:"float|u.quantity.Quantity", P:"float|u.quantity.Quantity"=1, wavelength:"float|u.quantity.Quantity"=1.064*u.um, mod_amp:"float|u.quantity.Quantity"=1)->np.ndarray:
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mod_amp = mod_amp * waists[0]
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n_points = int(len(positions[0,:])/2)
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dx, x_mod = modulation_function(mod_amp, n_points, func = 'arccos')
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A = 2*P/(np.pi*w(positions[1,:], waists[0], wavelength)*w(positions[1,:], waists[1], wavelength))
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U_tilde = (1 / (2 * ac.eps0 * ac.c)) * alpha * (4 * np.pi * ac.eps0 * ac.a0**3)
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dU = np.zeros(2*n_points)
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for i in range(len(x_mod)):
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dU = np.vstack((dU, np.exp(-2 * (np.subtract(x_mod[i], positions[0,:])/w(positions[1,:], waists[0], wavelength))**2)))
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U = - U_tilde * A * 1/(2*mod_amp) * np.trapz(dU, dx = dx, axis = 0)
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return U
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#####################################################################
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# COMPUTE/EXTRACT TRAP POTENTIAL AND PARAMETERS #
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@ -352,11 +360,11 @@ def plotPotential(Positions, ComputedPotentials, axis, Params = [], listToIterat
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elif i % 2 != 0:
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plt.plot(Positions[axis], ComputedPotentials[i][axis], label = 'Effective Trap Depth = ' + str(round(EffectiveTrapDepthInKelvin.value, 2)) + ' ' + str(EffectiveTrapDepthInKelvin.unit) + '; ' + generate_label(v, dv))
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if axis == 0:
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dir = 'X'
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dir = 'X - Horizontal'
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elif axis == 1:
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dir = 'Y'
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dir = 'Y - Propagation'
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else:
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dir = 'Z'
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dir = 'Z - Vertical'
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plt.ylim(top = 0)
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plt.xlabel(dir + ' Direction (um)', fontsize= 12, fontweight='bold')
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@ -368,6 +376,96 @@ def plotPotential(Positions, ComputedPotentials, axis, Params = [], listToIterat
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plt.savefig('pot_' + dir + '.png')
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plt.show()
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def plotIntensityProfileAndPotentials(Power, waists, alpha, wavelength, options):
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w_x = waists[0]
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w_z = waists[1]
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extent = options['extent']
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modulation = options['modulation']
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if not modulation:
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extent = 50
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x_Positions = np.arange(-extent, extent, 1)*u.um
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y_Positions = np.arange(-extent, extent, 1)*u.um
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z_Positions = np.arange(-extent, extent, 1)*u.um
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idx = np.where(y_Positions==0)[0][0]
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alpha = Polarizability
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wavelength = 1.064*u.um
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xm,ym,zm = np.meshgrid(x_Positions, y_Positions, z_Positions, sparse=True, indexing='ij')
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## Single Gaussian Beam
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A = 2*Power/(np.pi*w(ym, w_x, wavelength)*w(ym, w_z, wavelength))
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I = A * np.exp(-2 * ((xm/w(ym, w_x, wavelength))**2 + (zm/w(ym, w_z, wavelength))**2))
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I = np.transpose(I.to(u.MW/(u.cm*u.cm)))
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U_tilde = (1 / (2 * ac.eps0 * ac.c)) * alpha * (4 * np.pi * ac.eps0 * ac.a0**3)
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U = - U_tilde * I
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U = (U/ac.k_B).to(u.uK)
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fig = plt.figure(figsize=(12, 6))
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ax = fig.add_subplot(121)
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ax.set_title('Intensity Profile ($MW/cm^2$)\n Aspect Ratio = %.2f' %(w_x/w_z))
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im = plt.imshow(I[:,idx,:].value, cmap="coolwarm", extent=[np.min(x_Positions.value), np.max(x_Positions.value), np.min(z_Positions.value), np.max(z_Positions.value)])
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plt.xlabel('X - Horizontal (um)', fontsize= 12, fontweight='bold')
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plt.ylabel('Z - Vertical (um)', fontsize= 12, fontweight='bold')
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ax.set_aspect('equal')
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fig.colorbar(im, fraction=0.046, pad=0.04, orientation='vertical')
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bx = fig.add_subplot(122)
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bx.set_title('Trap Potential')
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plt.plot(x_Positions, U[np.where(x_Positions==0)[0][0], idx, :], label = 'X - Horizontal')
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plt.plot(z_Positions, U[:, idx, np.where(z_Positions==0)[0][0]], label = 'Z - Vertical')
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plt.ylim(top = 0)
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plt.xlabel('Extent (um)', fontsize= 12, fontweight='bold')
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plt.ylabel('Depth (uK)', fontsize= 12, fontweight='bold')
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plt.tight_layout()
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plt.grid(visible=1)
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plt.legend(prop={'size': 12, 'weight': 'bold'})
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plt.show()
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else:
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mod_amp = options['modulation_amplitude']
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x_Positions = np.arange(-extent, extent, 1)*u.um
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y_Positions = np.arange(-extent, extent, 1)*u.um
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z_Positions = np.arange(-extent, extent, 1)*u.um
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mod_amp = mod_amp * w_x
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n_points = int(len(x_Positions)/2)
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dx, xmod_Positions = modulation_function(mod_amp, n_points, func = 'arccos')
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idx = np.where(y_Positions==0)[0][0]
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xm,ym,zm,xmodm = np.meshgrid(x_Positions, y_Positions, z_Positions, xmod_Positions, sparse=True, indexing='ij')
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A = 2*Power/(np.pi*w(0*u.um , w_x, wavelength)*w(0*u.um , w_z, wavelength))
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intensity_profile = A * 1/(2*mod_amp) * np.trapz(np.exp(-2 * (((xmodm - xm)/w(ym, w_x, wavelength))**2 + (zm/w(ym, w_z, wavelength))**2)), dx = dx, axis = -1)
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I = np.transpose(intensity_profile[:, idx, :].to(u.MW/(u.cm*u.cm)))
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U_tilde = (1 / (2 * ac.eps0 * ac.c)) * alpha * (4 * np.pi * ac.eps0 * ac.a0**3)
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U = - U_tilde * I
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U = (U/ac.k_B).to(u.uK)
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fig = plt.figure(figsize=(12, 6))
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ax = fig.add_subplot(121)
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ax.set_title('Intensity Profile ($MW/cm^2$)')
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im = plt.imshow(I.value, cmap="coolwarm", extent=[np.min(x_Positions.value), np.max(x_Positions.value), np.min(z_Positions.value), np.max(z_Positions.value)])
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plt.xlabel('X - Horizontal (um)', fontsize= 12, fontweight='bold')
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plt.ylabel('Z - Vertical (um)', fontsize= 12, fontweight='bold')
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ax.set_aspect('equal')
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fig.colorbar(im, fraction=0.046, pad=0.04, orientation='vertical')
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bx = fig.add_subplot(122)
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bx.set_title('Trap Potential')
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plt.plot(x_Positions, U[np.where(x_Positions==0)[0][0], :], label = 'X - Horizontal')
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plt.plot(z_Positions, U[:, np.where(z_Positions==0)[0][0]], label = 'Z - Vertical')
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plt.ylim(top = 0)
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plt.xlabel('Extent (um)', fontsize= 12, fontweight='bold')
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plt.ylabel('Depth (uK)', fontsize= 12, fontweight='bold')
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plt.tight_layout()
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plt.grid(visible=1)
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plt.legend(prop={'size': 12, 'weight': 'bold'})
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plt.show()
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def plotScatteringLengths():
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BField = np.arange(0, 2.59, 1e-3) * u.G
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a_s_array = np.zeros(len(BField)) * ac.a0
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@ -397,8 +495,13 @@ if __name__ == '__main__':
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Power = 40*u.W
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Polarizability = 184.4 # in a.u, most precise measured value of Dy polarizability
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Wavelength = 1.064*u.um
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w_x, w_z = 27.5*u.um, 33.8*u.um # Beam Waists in the x and y directions
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# Power = 11*u.W
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# Polarizability = 184.4 # in a.u, most precise measured value of Dy polarizability
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# w_x, w_z = 54.0*u.um, 54.0*u.um # Beam Waists in the x and y directions
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options = {
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'axis': 0, # axis referenced to the beam along which you want the dipole trap potential
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'extent': 3e2, # range of spatial coordinates in one direction to calculate trap potential over
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@ -412,24 +515,55 @@ if __name__ == '__main__':
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'disp_foci': 3 * z_R(w_0 = np.asarray([30]), lamb = 1.064)[0]*u.um # difference in position of the foci along the propagation direction (Astigmatism)
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}
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ComputedPotentials = []
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Params = []
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"""Plot ideal and trap potential resulting for given parameters only"""
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# ComputedPotentials = []
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# Params = []
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Positions, IdealTrappingPotential, TrappingPotential, TrapDepthsInKelvin, CalculatedTrapFrequencies, ExtractedTrapFrequencies = computeTrapPotential(w_x, w_z, Power, Polarizability, options)
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ComputedPotentials.append(IdealTrappingPotential)
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ComputedPotentials.append(TrappingPotential)
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Params.append([TrapDepthsInKelvin, CalculatedTrapFrequencies, ExtractedTrapFrequencies])
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# Positions, IdealTrappingPotential, TrappingPotential, TrapDepthsInKelvin, CalculatedTrapFrequencies, ExtractedTrapFrequencies = computeTrapPotential(w_x, w_z, Power, Polarizability, options)
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# ComputedPotentials.append(IdealTrappingPotential)
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# ComputedPotentials.append(TrappingPotential)
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# Params.append([TrapDepthsInKelvin, CalculatedTrapFrequencies, ExtractedTrapFrequencies])
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ComputedPotentials = np.asarray(ComputedPotentials)
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plotPotential(Positions, ComputedPotentials, options['axis'], Params)
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# ComputedPotentials = np.asarray(ComputedPotentials)
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# plotPotential(Positions, ComputedPotentials, options['axis'], Params)
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"""Plot harmonic fit for trap potential resulting for given parameters only"""
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# v, dv, popt, pcov = extractTrapFrequency(Positions, TrappingPotential, options['axis'])
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# plotHarmonicFit(Positions, TrappingPotential, TrapDepthsInKelvin, options['axis'], popt, pcov)
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"""Plot trap potential resulting for given parameters (with one parameter being a list of values and the potential being computed for each of these values) only"""
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# ComputedPotentials = []
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# Params = []
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# Power = [10, 20, 25, 30, 35, 40]*u.W # Single Beam Power
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# for p in Power:
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# Positions, IdealTrappingPotential, TrappingPotential, TrapDepthsInKelvin, CalculatedTrapFrequencies, ExtractedTrapFrequencies = computeTrapPotential(w_x, w_z, p, Polarizability, options)
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# ComputedPotentials.append(IdealTrappingPotential)
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# ComputedPotentials.append(TrappingPotential)
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# Params.append([TrapDepthsInKelvin, CalculatedTrapFrequencies, ExtractedTrapFrequencies])
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# ComputedPotentials = np.asarray(ComputedPotentials)
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# plotPotential(Positions, ComputedPotentials, options['axis'], Params)
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"""Plot transverse intensity profile and trap potential resulting for given parameters only"""
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# options = {
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# 'extent': 70, # range of spatial coordinates in one direction to calculate trap potential over
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# 'modulation': True,
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# 'modulation_amplitude': 4.37
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# }
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# plotIntensityProfileAndPotentials(Power, [w_x, w_z], Polarizability, Wavelength, options)
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"""Calculate relevant parameters for evaporative cooling"""
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AtomNumber = 1.13 * 1e7
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Temperature = 30 * u.uK
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Temperature = 100 * u.uK
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BField = 2.1 * u.G
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modulation = False
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aspect_ratio = 3.67
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init_ar = w_x / w_z
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w_x = w_x * (aspect_ratio / init_ar)
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if modulation:
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aspect_ratio = 3.67
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init_ar = w_x / w_z
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w_x = w_x * (aspect_ratio / init_ar)
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n = particleDensity(w_x, w_z, Power, Polarizability, N = AtomNumber, T = Temperature, m = 164*u.u).decompose().to(u.cm**(-3))
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Gamma_elastic = calculateElasticCollisionRate(w_x, w_z, Power, Polarizability, N = AtomNumber, T = Temperature, B = BField)
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@ -451,15 +585,4 @@ if __name__ == '__main__':
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# plotScatteringLengths()
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# v, dv, popt, pcov = extractTrapFrequency(Positions, TrappingPotential, options['axis'])
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# plotHarmonicFit(Positions, TrappingPotential, TrapDepthsInKelvin, options['axis'], popt, pcov)
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# Power = [10, 20, 25, 30, 35, 40]*u.W # Single Beam Power
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# for p in Power:
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# Positions, IdealTrappingPotential, TrappingPotential, TrapDepthsInKelvin, CalculatedTrapFrequencies, ExtractedTrapFrequencies = computeTrapPotential(w_x, w_z, p, Polarizability, options)
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# ComputedPotentials.append(IdealTrappingPotential)
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# ComputedPotentials.append(TrappingPotential)
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# Params.append([TrapDepthsInKelvin, CalculatedTrapFrequencies, ExtractedTrapFrequencies])
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# ComputedPotentials = np.asarray(ComputedPotentials)
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# plotPotential(Positions, ComputedPotentials, options['axis'], Params)
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