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Added a way to append a suffix to the scan parameter value to indicate units in the image viewer, other bugfixes, minor changes.

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This commit is contained in:
Karthik 2025-08-31 11:09:13 +02:00
parent 652a38ab9f
commit bbc4081b89
10 changed files with 160 additions and 136 deletions
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1
Data-Analyzer/+Analyzer/performAnalysis.m
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@ -38,6 +38,7 @@ function [results, scan_parameter_values] = performAnalysis(options)
options.skipFullODImagesFolderUse (1,1) logical
options.showProgressBar (1,1) logical
options.measurementName (1,:) char
options.scanParameterUnits (1,:) char
options.selectedPath (1,:) char
options.folderPath (1,:) char
options.baseDataFolder (1,:) char

20
Data-Analyzer/+Analyzer/runInteractiveODImageViewer.m
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@ -69,7 +69,23 @@ function runInteractiveODImageViewer(od_imgs, scan_parameter_values, file_list,
% Update figure title with shot + filename
hFig.Name = sprintf('Shot %d | %s', idx, shortName);
txtHandle.String = sprintf('%.2f', scan_parameter_values(idx));
% Determine unit suffix and interpreter
switch lower(options.scanParameterUnits)
case {'degrees', 'deg', '°'}
unitSuffix = '^\circ'; % LaTeX degree symbol
txtInterpreter = 'tex';
case {'gauss', 'g'}
unitSuffix = ' G';
txtInterpreter = 'none';
otherwise
unitSuffix = '';
txtInterpreter = 'none';
end
% Update overlay text with scan parameter + unit
txtHandle.String = sprintf('%.2f%s', scan_parameter_values(idx), unitSuffix);
txtHandle.Interpreter = txtInterpreter; % switch interpreter dynamically
sliderHandle.Value = idx;
drawnow;
@ -87,4 +103,4 @@ function runInteractiveODImageViewer(od_imgs, scan_parameter_values, file_list,
end
end
end
end
end

38
Data-Analyzer/+Scripts/BECToDroplets/plotImages.m
View File

@ -11,7 +11,7 @@ options = struct();
% File paths
options.baseDataFolder = '//DyLabNAS/Data';
options.FullODImagesFolder = 'D:/Data - Experiment/FullODImages/202508';
options.FullODImagesFolder = 'F:/Data - Experiment/FullODImages/202508';
options.measurementName = 'BECToDroplets';
scriptFullPath = mfilename('fullpath');
options.saveDirectory = fileparts(scriptFullPath);
@ -42,24 +42,6 @@ options.Angular_Sigma = 2;
options.Angular_WindowSize = 5;
options.zoom_size = 50;
% Scan parameter
options.scan_parameter = 'rot_mag_field';
switch options.measurementName
case 'BECToDroplets'
options.scan_reference_values = [2.40, 2.39, 2.38, 2.37, 2.35, 2.34, 2.32, 2.30, 2.28, 2.26, 2.24, 2.22, 2.2, 2.15, 2.10, 2.05, 2, 1.95, 1.90, 1.85, 1.8];
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.scan_reference_values = [2.45, 2.44, 2.43, 2.42, 2.4, 2.39, 2.38, 2.37, 2.36, 2.35, 2.34, 2.32, 2.3, 2.28, 2.25, 2.2, 2.15, 2.10, 2.0, 1.90, 1.8];
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.scan_reference_values = [0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40];
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.scan_reference_values = fliplr([0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40]);
options.titleString = 'Stripes to Droplets';
end
% Flags
options.skipUnshuffling = false;
options.skipNormalization = false;
@ -79,6 +61,24 @@ options.showProgressBar = true;
% Extras
options.font = 'Bahnschrift';
switch options.measurementName
case 'BECToDroplets'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end
%% ===== Collect Images and Launch Viewer =====

39
Data-Analyzer/+Scripts/BECToDroplets/runFullAnalysis.m
View File

@ -11,7 +11,7 @@ options = struct();
% File paths
options.baseDataFolder = '//DyLabNAS/Data';
options.FullODImagesFolder = 'D:/Data - Experiment/FullODImages/202508';
options.FullODImagesFolder = 'F:/Data - Experiment/FullODImages/202508';
options.measurementName = 'BECToDroplets';
scriptFullPath = mfilename('fullpath');
options.saveDirectory = fileparts(scriptFullPath);
@ -42,28 +42,11 @@ options.Angular_Sigma = 2;
options.Angular_WindowSize = 5;
options.zoom_size = 50;
% Scan parameter
options.scan_parameter = 'rot_mag_field';
switch options.measurementName
case 'BECToDroplets'
options.scan_reference_values = [2.40, 2.39, 2.38, 2.37, 2.35, 2.34, 2.32, 2.30, 2.28, 2.26, 2.24, 2.22, 2.2, 2.15, 2.10, 2.05, 2, 1.95, 1.90, 1.85, 1.8];
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.scan_reference_values = [2.45, 2.44, 2.43, 2.42, 2.4, 2.39, 2.38, 2.37, 2.36, 2.35, 2.34, 2.32, 2.3, 2.28, 2.25, 2.2, 2.15, 2.10, 2.0, 1.90, 1.8];
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.scan_reference_values = [0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40];
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.scan_reference_values = fliplr([0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40]);
options.titleString = 'Stripes to Droplets';
end
% Flags
options.skipUnshuffling = false;
options.skipNormalization = false;
options.skipFringeRemoval = true;
options.skipPreprocessing = true;
options.skipMasking = true;
options.skipIntensityThresholding = true;
@ -78,6 +61,24 @@ options.showProgressBar = true;
% Extras
options.font = 'Bahnschrift';
switch options.measurementName
case 'BECToDroplets'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end
%% ===== Run Batch Analysis =====
results_all = Helper.batchAnalyze(dataSources, options);

6
Data-Analyzer/+Scripts/BECToDropletsToStripes/plotImages.m
View File

@ -11,7 +11,7 @@ options = struct();
% File paths
options.baseDataFolder = '//DyLabNAS/Data';
% options.FullODImagesFolder = 'D:/Data - Experiment/FullODImages/202508';
options.FullODImagesFolder = 'F:/Data - Experiment/FullODImages/202508';
options.measurementName = 'DropletsToStripes';
scriptFullPath = mfilename('fullpath');
options.saveDirectory = fileparts(scriptFullPath);
@ -64,15 +64,19 @@ options.font = 'Bahnschrift';
switch options.measurementName
case 'BECToDroplets'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end

38
Data-Analyzer/+Scripts/BECToDropletsToStripes/runFullAnalysis.m
View File

@ -11,7 +11,7 @@ options = struct();
% File paths
options.baseDataFolder = '//DyLabNAS/Data';
options.FullODImagesFolder = 'D:/Data - Experiment/FullODImages/202508';
options.FullODImagesFolder = 'F:/Data - Experiment/FullODImages/202508';
options.measurementName = 'DropletsToStripes';
scriptFullPath = mfilename('fullpath');
options.saveDirectory = fileparts(scriptFullPath);
@ -42,24 +42,6 @@ options.Angular_Sigma = 2;
options.Angular_WindowSize = 5;
options.zoom_size = 50;
% Scan parameter
options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
switch options.measurementName
case 'BECToDroplets'
options.scan_reference_values = [2.40, 2.39, 2.38, 2.37, 2.35, 2.34, 2.32, 2.30, 2.28, 2.26, 2.24, 2.22, 2.2, 2.15, 2.10, 2.05, 2, 1.95, 1.90, 1.85, 1.8];
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.scan_reference_values = [2.45, 2.44, 2.43, 2.42, 2.4, 2.39, 2.38, 2.37, 2.36, 2.35, 2.34, 2.32, 2.3, 2.28, 2.25, 2.2, 2.15, 2.10, 2.0, 1.90, 1.8];
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.scan_reference_values = [0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40];
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.scan_reference_values = fliplr([0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40]);
options.titleString = 'Stripes to Droplets';
end
% Flags
options.skipUnshuffling = false;
options.skipNormalization = false;
@ -79,6 +61,24 @@ options.showProgressBar = true;
% Extras
options.font = 'Bahnschrift';
switch options.measurementName
case 'BECToDroplets'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end
%% ===== Run Batch Analysis =====

38
Data-Analyzer/+Scripts/BECToStripes/plotImages.m
View File

@ -11,7 +11,7 @@ options = struct();
% File paths
options.baseDataFolder = '//DyLabNAS/Data';
options.FullODImagesFolder = 'D:/Data - Experiment/FullODImages/202508';
options.FullODImagesFolder = 'F:/Data - Experiment/FullODImages/202508';
options.measurementName = 'BECToStripes';
scriptFullPath = mfilename('fullpath');
options.saveDirectory = fileparts(scriptFullPath);
@ -42,24 +42,6 @@ options.Angular_Sigma = 2;
options.Angular_WindowSize = 5;
options.zoom_size = 50;
% Scan parameter
options.scan_parameter = 'rot_mag_field';
switch options.measurementName
case 'BECToDroplets'
options.scan_reference_values = [2.40, 2.39, 2.38, 2.37, 2.35, 2.34, 2.32, 2.30, 2.28, 2.26, 2.24, 2.22, 2.2, 2.15, 2.10, 2.05, 2, 1.95, 1.90, 1.85, 1.8];
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.scan_reference_values = [2.45, 2.44, 2.43, 2.42, 2.4, 2.39, 2.38, 2.37, 2.36, 2.35, 2.34, 2.32, 2.3, 2.28, 2.25, 2.2, 2.15, 2.10, 2.0, 1.90, 1.8];
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.scan_reference_values = [0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40];
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.scan_reference_values = fliplr([0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40]);
options.titleString = 'Stripes to Droplets';
end
% Flags
options.skipUnshuffling = false;
options.skipNormalization = false;
@ -79,6 +61,24 @@ options.showProgressBar = true;
% Extras
options.font = 'Bahnschrift';
switch options.measurementName
case 'BECToDroplets'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end
%% ===== Collect Images and Launch Viewer =====

39
Data-Analyzer/+Scripts/BECToStripes/runFullAnalysis.m
View File

@ -11,7 +11,7 @@ options = struct();
% File paths
options.baseDataFolder = '//DyLabNAS/Data';
options.FullODImagesFolder = 'D:/Data - Experiment/FullODImages/202508';
options.FullODImagesFolder = 'F:/Data - Experiment/FullODImages/202508';
options.measurementName = 'BECToStripes';
scriptFullPath = mfilename('fullpath');
options.saveDirectory = fileparts(scriptFullPath);
@ -42,28 +42,11 @@ options.Angular_Sigma = 2;
options.Angular_WindowSize = 5;
options.zoom_size = 50;
% Scan parameter
options.scan_parameter = 'rot_mag_field';
switch options.measurementName
case 'BECToDroplets'
options.scan_reference_values = [2.40, 2.39, 2.38, 2.37, 2.35, 2.34, 2.32, 2.30, 2.28, 2.26, 2.24, 2.22, 2.2, 2.15, 2.10, 2.05, 2, 1.95, 1.90, 1.85, 1.8];
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.scan_reference_values = [2.45, 2.44, 2.43, 2.42, 2.4, 2.39, 2.38, 2.37, 2.36, 2.35, 2.34, 2.32, 2.3, 2.28, 2.25, 2.2, 2.15, 2.10, 2.0, 1.90, 1.8];
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.scan_reference_values = [0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40];
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.scan_reference_values = fliplr([0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40]);
options.titleString = 'Stripes to Droplets';
end
% Flags
options.skipUnshuffling = false;
options.skipNormalization = false;
options.skipFringeRemoval = true;
options.skipPreprocessing = true;
options.skipMasking = true;
options.skipIntensityThresholding = true;
@ -78,6 +61,24 @@ options.showProgressBar = true;
% Extras
options.font = 'Bahnschrift';
switch options.measurementName
case 'BECToDroplets'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end
%% ===== Run Batch Analysis =====
results_all = Helper.batchAnalyze(dataSources, options);

38
Data-Analyzer/+Scripts/BECToStripesToDroplets/plotImages.m
View File

@ -11,7 +11,7 @@ options = struct();
% File paths
options.baseDataFolder = '//DyLabNAS/Data';
options.FullODImagesFolder = 'D:/Data - Experiment/FullODImages/202508';
options.FullODImagesFolder = 'F:/Data - Experiment/FullODImages/202508';
options.measurementName = 'StripesToDroplets';
scriptFullPath = mfilename('fullpath');
options.saveDirectory = fileparts(scriptFullPath);
@ -42,24 +42,6 @@ options.Angular_Sigma = 2;
options.Angular_WindowSize = 5;
options.zoom_size = 50;
% Scan parameter
options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
switch options.measurementName
case 'BECToDroplets'
options.scan_reference_values = [2.40, 2.39, 2.38, 2.37, 2.35, 2.34, 2.32, 2.30, 2.28, 2.26, 2.24, 2.22, 2.2, 2.15, 2.10, 2.05, 2, 1.95, 1.90, 1.85, 1.8];
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.scan_reference_values = [2.45, 2.44, 2.43, 2.42, 2.4, 2.39, 2.38, 2.37, 2.36, 2.35, 2.34, 2.32, 2.3, 2.28, 2.25, 2.2, 2.15, 2.10, 2.0, 1.90, 1.8];
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.scan_reference_values = [0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40];
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.scan_reference_values = fliplr([0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40]);
options.titleString = 'Stripes to Droplets';
end
% Flags
options.skipUnshuffling = false;
options.skipNormalization = false;
@ -79,6 +61,24 @@ options.showProgressBar = true;
% Extras
options.font = 'Bahnschrift';
switch options.measurementName
case 'BECToDroplets'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end
%% ===== Collect Images and Launch Viewer =====

39
Data-Analyzer/+Scripts/BECToStripesToDroplets/runFullAnalysis.m
View File

@ -11,7 +11,7 @@ options = struct();
% File paths
options.baseDataFolder = '//DyLabNAS/Data';
options.FullODImagesFolder = 'D:/Data - Experiment/FullODImages/202508';
options.FullODImagesFolder = 'F:/Data - Experiment/FullODImages/202508';
options.measurementName = 'StripesToDroplets';
scriptFullPath = mfilename('fullpath');
options.saveDirectory = fileparts(scriptFullPath);
@ -42,28 +42,11 @@ options.Angular_Sigma = 2;
options.Angular_WindowSize = 5;
options.zoom_size = 50;
% Scan parameter
options.scan_parameter = 'ps_rot_mag_fin_pol_angle';
switch options.measurementName
case 'BECToDroplets'
options.scan_reference_values = [2.40, 2.39, 2.38, 2.37, 2.35, 2.34, 2.32, 2.30, 2.28, 2.26, 2.24, 2.22, 2.2, 2.15, 2.10, 2.05, 2, 1.95, 1.90, 1.85, 1.8];
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.scan_reference_values = [2.45, 2.44, 2.43, 2.42, 2.4, 2.39, 2.38, 2.37, 2.36, 2.35, 2.34, 2.32, 2.3, 2.28, 2.25, 2.2, 2.15, 2.10, 2.0, 1.90, 1.8];
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.scan_reference_values = [0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40];
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.scan_reference_values = fliplr([0, 5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 35, 40]);
options.titleString = 'Stripes to Droplets';
end
% Flags
options.skipUnshuffling = false;
options.skipNormalization = false;
options.skipFringeRemoval = true;
options.skipPreprocessing = true;
options.skipMasking = true;
options.skipIntensityThresholding = true;
@ -78,6 +61,24 @@ options.showProgressBar = true;
% Extras
options.font = 'Bahnschrift';
switch options.measurementName
case 'BECToDroplets'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Droplets';
case 'BECToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'gauss';
options.titleString = 'BEC to Stripes';
case 'DropletsToStripes'
options.flipSortOrder = true;
options.scanParameterUnits = 'degrees';
options.titleString = 'Droplets to Stripes';
case 'StripesToDroplets'
options.flipSortOrder = false;
options.scanParameterUnits = 'degrees';
options.titleString = 'Stripes to Droplets';
end
%% ===== Run Batch Analysis =====