diff --git a/Data-Analyzer/analyzePhaseTransitionSimulation.m b/Data-Analyzer/Deprecated/analyzePhaseTransitionSimulation.m similarity index 100% rename from Data-Analyzer/analyzePhaseTransitionSimulation.m rename to Data-Analyzer/Deprecated/analyzePhaseTransitionSimulation.m diff --git a/Data-Analyzer/compareSpectralWeights.m b/Data-Analyzer/Deprecated/compareSpectralWeights.m similarity index 100% rename from Data-Analyzer/compareSpectralWeights.m rename to Data-Analyzer/Deprecated/compareSpectralWeights.m diff --git a/Data-Analyzer/computeBondOrderParameters.m b/Data-Analyzer/Deprecated/computeBondOrderParameters.m similarity index 100% rename from Data-Analyzer/computeBondOrderParameters.m rename to Data-Analyzer/Deprecated/computeBondOrderParameters.m diff --git a/Data-Analyzer/executionScripts.m b/Data-Analyzer/Deprecated/executionScripts.m similarity index 100% rename from Data-Analyzer/executionScripts.m rename to Data-Analyzer/Deprecated/executionScripts.m diff --git a/Data-Analyzer/extractHexaticOrder.m b/Data-Analyzer/Deprecated/extractHexaticOrder.m similarity index 100% rename from Data-Analyzer/extractHexaticOrder.m rename to Data-Analyzer/Deprecated/extractHexaticOrder.m diff --git a/Data-Analyzer/extractSpectralWeight.m b/Data-Analyzer/Deprecated/extractSpectralWeight.m similarity index 100% rename from Data-Analyzer/extractSpectralWeight.m rename to Data-Analyzer/Deprecated/extractSpectralWeight.m diff --git a/Data-Analyzer/matchTFRadiiAtomNumber.m b/Data-Analyzer/Deprecated/matchTFRadiiAtomNumber.m similarity index 100% rename from Data-Analyzer/matchTFRadiiAtomNumber.m rename to Data-Analyzer/Deprecated/matchTFRadiiAtomNumber.m diff --git a/Data-Analyzer/matchTFRadiiMagnification.m b/Data-Analyzer/Deprecated/matchTFRadiiMagnification.m similarity index 100% rename from Data-Analyzer/matchTFRadiiMagnification.m rename to Data-Analyzer/Deprecated/matchTFRadiiMagnification.m diff --git a/Data-Analyzer/+Colormaps/coolwarm.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/coolwarm.m similarity index 100% rename from Data-Analyzer/+Colormaps/coolwarm.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/coolwarm.m diff --git a/Data-Analyzer/+Colormaps/fake_parula.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/fake_parula.m similarity index 100% rename from Data-Analyzer/+Colormaps/fake_parula.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/fake_parula.m diff --git a/Data-Analyzer/+Colormaps/inferno.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/inferno.m similarity index 100% rename from Data-Analyzer/+Colormaps/inferno.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/inferno.m diff --git a/Data-Analyzer/+Colormaps/magma.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/magma.m similarity index 100% rename from Data-Analyzer/+Colormaps/magma.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/magma.m diff --git a/Data-Analyzer/+Colormaps/plasma.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/plasma.m similarity index 100% rename from Data-Analyzer/+Colormaps/plasma.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/plasma.m diff --git a/Data-Analyzer/+Colormaps/viridis.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/viridis.m similarity index 100% rename from Data-Analyzer/+Colormaps/viridis.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/+Colormaps/viridis.m diff --git a/Data-Analyzer/analyzeFolder.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/analyzeFolder.m similarity index 100% rename from Data-Analyzer/analyzeFolder.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/analyzeFolder.m diff --git a/Data-Analyzer/compareAngularCorrelation.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/compareAngularCorrelation.m similarity index 100% rename from Data-Analyzer/compareAngularCorrelation.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/compareAngularCorrelation.m diff --git a/Data-Analyzer/conductSpectralAnalysis.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/conductSpectralAnalysis.m similarity index 100% rename from Data-Analyzer/conductSpectralAnalysis.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/conductSpectralAnalysis.m diff --git a/Data-Analyzer/extractAutocorrelation.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/extractAutocorrelation.m similarity index 100% rename from Data-Analyzer/extractAutocorrelation.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/extractAutocorrelation.m diff --git a/Data-Analyzer/extractCustomCorrelation.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/extractCustomCorrelation.m similarity index 100% rename from Data-Analyzer/extractCustomCorrelation.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/extractCustomCorrelation.m diff --git a/Data-Analyzer/extractQuantities.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/extractQuantities.m similarity index 100% rename from Data-Analyzer/extractQuantities.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/extractQuantities.m diff --git a/Data-Analyzer/plotImages.m b/Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/plotImages.m similarity index 100% rename from Data-Analyzer/plotImages.m rename to Data-Analyzer/StructuralPhaseTransition/SpectralAnalysisRoutines/plotImages.m