Calculations/Dipolar-Gas-Simulator/+Plotter/visualizeGSWavefunction.m

function visualizeGSWavefunction(run_index)
    set(0,'defaulttextInterpreter','latex')
    set(groot, 'defaultAxesTickLabelInterpreter','latex'); set(groot, 'defaultLegendInterpreter','latex');
    
    folder_path = './Data';

    Data   = load(sprintf(horzcat(folder_path, '/Run_%03i/psi_gs.mat'),run_index),'psi','Params','Transf','Observ');
    
    Params = Data.Params;
    Transf = Data.Transf; 
    Observ = Data.Observ; 
    if isgpuarray(Data.psi)
        psi    = gather(Data.psi);
    else
        psi    = Data.psi;
    end
    
    if isgpuarray(Data.Observ.residual)
        Observ.residual = gather(Data.Observ.residual);
    else
        Observ.residual = Data.Observ.residual;
    end

    format long
    x = Transf.x*Params.l0*1e6; 
    y = Transf.y*Params.l0*1e6; 
    z = Transf.z*Params.l0*1e6; 
    dx = x(2)-x(1); dy = y(2)-y(1); dz = z(2)-z(1);

    %Plotting    
    figure('Position', [100, 100, 1600, 900]);
    clf
    
    % Subplot 1
    % subplot(2,3,1)
    subplot('Position', [0.05, 0.55, 0.28, 0.4])
    n = abs(psi).^2;
    nxz = squeeze(trapz(n*dy,2));
    nyz = squeeze(trapz(n*dx,1));
    nxy = squeeze(trapz(n*dz,3));
    
    plotxz = pcolor(x,z,nxz');
    set(plotxz, 'EdgeColor', 'none');
    colorbar
    xlabel('$x$ [$\mu$m]', 'FontSize', 14); ylabel('$z$ [$\mu$m]', 'FontSize', 14);
    title('$|\Psi_{zx}|^2$', 'FontSize', 14);
    
    % Subplot 2
    % subplot(2,3,2)
    subplot('Position', [0.36, 0.55, 0.28, 0.4])
    plotyz = pcolor(y,z,nyz');
    set(plotyz, 'EdgeColor', 'none');
    colorbar
    xlabel('$y$ [$\mu$m]', 'FontSize', 14); ylabel('$z$ [$\mu$m]', 'FontSize', 14);
    title('$|\Psi_{zy}|^2$', 'FontSize', 14);
    
    % Subplot 3
    % subplot(2,3,3)
    subplot('Position', [0.67, 0.55, 0.28, 0.4]);
    plotxy = pcolor(x,y,nxy');
    set(plotxy, 'EdgeColor', 'none');
    colorbar
    xlabel('$x$ [$\mu$m]', 'FontSize', 14); ylabel('$y$ [$\mu$m]', 'FontSize', 14);
    title('$ |\Psi_{xy}|^2$', 'FontSize', 14);

    % Subplot 4
    % subplot(2,3,4)
    subplot('Position', [0.05, 0.05, 0.26, 0.4]);
    plot(-log10(Observ.residual),'-b')
    ylabel('$-\mathrm{log}_{10}(r)$', 'FontSize', 14); xlabel('Time steps', 'FontSize', 14);
    title('Residual', 'FontSize', 14);

    % Subplot 5
    % subplot(2, 3, 5);
    subplot('Position', [0.36, 0.05, 0.26, 0.4]);
    plot(Observ.EVec,'-b')
    ylabel('$E$', 'FontSize', 14); xlabel('Time steps', 'FontSize', 14);
    title('Total Energy', 'FontSize', 14);

    % Subplot 6
    % subplot(2, 3, 6);
    subplot('Position', [0.67, 0.05, 0.26, 0.4]);
    plot(Observ.mucVec,'-b')
    ylabel('$\mu$', 'FontSize', 14); xlabel('Time steps', 'FontSize', 14);
    title('Chemical Potential', 'FontSize', 14);
end