{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Import supporting package" ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [], "source": [ "import xarray as xr\n", "import numpy as np\n", "import copy\n", "\n", "from uncertainties import ufloat\n", "from uncertainties import unumpy as unp\n", "from uncertainties import umath\n", "import random\n", "import matplotlib.pyplot as plt\n", "plt.rcParams['font.size'] = 12\n", "\n", "from DataContainer.ReadData import read_hdf5_file\n", "from Analyser.ImagingAnalyser import ImageAnalyser\n", "from Analyser.FitAnalyser import FitAnalyser\n", "from Analyser.FitAnalyser import NewFitModel, DensityProfileBEC2dModel\n", "from ToolFunction.ToolFunction import *\n", "\n", "from scipy.optimize import curve_fit\n", "\n", "from ToolFunction.HomeMadeXarrayFunction import errorbar, dataarray_plot_errorbar\n", "xr.plot.dataarray_plot.errorbar = errorbar\n", "xr.plot.accessor.DataArrayPlotAccessor.errorbar = dataarray_plot_errorbar\n", "\n", "imageAnalyser = ImageAnalyser()\n", "\n", "# %matplotlib notebook" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Start a client for parallel computing" ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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Client

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Connection method: Cluster objectCluster type: distributed.LocalCluster
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Cluster Info

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LocalCluster

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Status: runningUsing processes: True
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Scheduler Info

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Scheduler

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" ], "text/plain": [ "" ] }, "execution_count": 2, "metadata": {}, "output_type": "execute_result" } ], "source": [ "from dask.distributed import Client\n", "client = Client(n_workers=8, threads_per_worker=16, processes=True, memory_limit='20GB')\n", "client" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Start a client for Mongo DB" ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [], "source": [ "import pymongo\n", "import xarray_mongodb\n", "\n", "from DataContainer.MongoDB import MongoDB\n", "\n", "mongoClient = pymongo.MongoClient('mongodb://control:DyLab2021@127.0.0.1:27017/?authMechanism=DEFAULT')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Set global path for experiment" ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [], "source": [ "groupList = [\n", " \"images/MOT_3D_Camera/in_situ_absorption\",\n", " \"images/ODT_1_Axis_Camera/in_situ_absorption\",\n", " \"images/ODT_2_Axis_Camera/in_situ_absorption\",\n", "]\n", "\n", "dskey = {\n", " \"images/MOT_3D_Camera/in_situ_absorption\": \"camera_0\",\n", " \"images/ODT_1_Axis_Camera/in_situ_absorption\": \"camera_1\",\n", " \"images/ODT_2_Axis_Camera/in_situ_absorption\": \"camera_2\",\n", "}\n" ] }, { "cell_type": "code", "execution_count": 5, "metadata": {}, "outputs": [], "source": [ "img_dir = 'C:/Users/control/DyLab/Experiments/DyBEC/'\n", "SequenceName = \"Repetition_scan\"\n", "folderPath = img_dir + SequenceName + \"/\" + get_date()\n", "\n", "mongoDB = mongoClient[SequenceName]\n", "\n", "DB = MongoDB(mongoClient, mongoDB, date=get_date())" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "# Repetition Scans" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## scan MOT freq" ] }, { "cell_type": "code", "execution_count": 13, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'initial_horz_freq': array([102.75, 102.8 , 102.85, 102.9 , 102.95, 103. , 103.05]), 'initial_vert_freq': array([101.8 , 101.85, 101.9 , 101.95, 102. , 102.05, 102.1 , 102.15,\n", " 102.2 , 102.25])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. 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height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0014\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i])\n", " for i in [0,1]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_1\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (310, 815)\n", "imageAnalyser.span = (550, 1275)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.pcolormesh(ax=ax, vmin=0, cmap='jet', cbar_kwargs = dict(label='NCount'))\n", "plt.xlabel('Vert AOM Frequency')\n", "plt.ylabel('Horz AOM Frequency')\n", "plt.tight_layout()\n", "plt.show()\n", "\n", "# DB.create_global(shotNum, dataSet)\n", "# DB.add_data(shotNum, dataSet_cropOD, engine='xarray')" ] }, { "cell_type": "code", "execution_count": 14, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "
<xarray.DataArray 'OD' (initial_horz_freq: 1, initial_vert_freq: 1)>\n",
       "array([[65351.30239154]])\n",
       "Coordinates:\n",
       "  * initial_horz_freq  (initial_horz_freq) float64 103.0\n",
       "  * initial_vert_freq  (initial_vert_freq) float64 101.8
" ], "text/plain": [ "\n", "array([[65351.30239154]])\n", "Coordinates:\n", " * initial_horz_freq (initial_horz_freq) float64 103.0\n", " * initial_vert_freq (initial_vert_freq) float64 101.8" ] }, "execution_count": 14, "metadata": {}, "output_type": "execute_result" } ], "source": [ "Ncount_mean.where(Ncount_mean==Ncount_mean.max(), drop=True)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## scan MOT amp" ] }, { "cell_type": "code", "execution_count": 15, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'initial_horz_amp': array([0.45, 0.49, 0.53, 0.57, 0.61, 0.65, 0.69, 0.73, 0.77, 0.81]), 'initial_vert_amp': array([0.35, 0.39, 0.43, 0.47, 0.51, 0.55, 0.59, 0.63, 0.67, 0.71])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0015\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i])\n", " for i in [0,1]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_1\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (310, 815)\n", "imageAnalyser.span = (550, 1275)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.pcolormesh(ax=ax, vmin=0, cmap='jet', cbar_kwargs = dict(label='NCount'))\n", "plt.xlabel('Vert AOM Frequency')\n", "plt.ylabel('Horz AOM Frequency')\n", "plt.tight_layout()\n", "plt.show()\n", "\n", "# DB.create_global(shotNum, dataSet)\n", "# DB.add_data(shotNum, dataSet_cropOD, engine='xarray')" ] }, { "cell_type": "code", "execution_count": 16, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "
<xarray.DataArray 'OD' (initial_horz_amp: 1, initial_vert_amp: 1)>\n",
       "array([[70751.40524034]])\n",
       "Coordinates:\n",
       "  * initial_horz_amp  (initial_horz_amp) float64 0.81\n",
       "  * initial_vert_amp  (initial_vert_amp) float64 0.59
" ], "text/plain": [ "\n", "array([[70751.40524034]])\n", "Coordinates:\n", " * initial_horz_amp (initial_horz_amp) float64 0.81\n", " * initial_vert_amp (initial_vert_amp) float64 0.59" ] }, "execution_count": 16, "metadata": {}, "output_type": "execute_result" } ], "source": [ "Ncount_mean.where(Ncount_mean==Ncount_mean.max(), drop=True)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Scan final Z Comp Current" ] }, { "cell_type": "code", "execution_count": 25, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'compZ_final_current': array([0.233, 0.234, 0.235, 0.236, 0.237, 0.238, 0.239, 0.24 , 0.241,\n", " 0.242]), 'runs': array([0., 1., 2.])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0018\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i])\n", " for i in [0, 1]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_1\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (325, 875)\n", "imageAnalyser.span = (500, 500)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = Ncount_std, fmt='ob')\n", "#plt.xlabel('')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()\n", "\n", "# DB.create_global(shotNum, dataSet)\n", "# DB.add_data(shotNum, dataSet_cropOD, engine='xarray')" ] }, { "cell_type": "code", "execution_count": 26, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "
<xarray.DataArray 'OD' (compZ_final_current: 1)>\n",
       "array([26642.0066982])\n",
       "Coordinates:\n",
       "  * compZ_final_current  (compZ_final_current) float64 0.238
" ], "text/plain": [ "\n", "array([26642.0066982])\n", "Coordinates:\n", " * compZ_final_current (compZ_final_current) float64 0.238" ] }, "execution_count": 26, "metadata": {}, "output_type": "execute_result" } ], "source": [ "Ncount_mean.where(Ncount_mean==Ncount_mean.max(), drop=True)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Scan final horz amp" ] }, { "cell_type": "code", "execution_count": 27, "metadata": { "scrolled": false }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'final_horz_amp': array([5.0e-05, 7.0e-05, 9.0e-05, 1.1e-04, 1.3e-04, 1.5e-04, 1.7e-04,\n", " 1.9e-04, 2.1e-04, 2.3e-04, 2.5e-04]), 'runs': array([0., 1., 2.])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0019\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i])\n", " for i in [0, 1]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_1\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (325, 875)\n", "imageAnalyser.span = (500, 500)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = Ncount_std, fmt='ob')\n", "#plt.xlabel('')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()\n", "\n", "# DB.create_global(shotNum, dataSet)\n", "# DB.add_data(shotNum, dataSet_cropOD, engine='xarray')" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "Ncount_mean.where(Ncount_mean==Ncount_mean.max(), drop=True)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Scan final horz freq" ] }, { "cell_type": "code", "execution_count": 28, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'final_horz_freq': array([104.05 , 104.055, 104.06 , 104.065, 104.07 , 104.075, 104.08 ,\n", " 104.085, 104.09 , 104.095, 104.1 ]), 'runs': array([0., 1., 2.])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0020\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i])\n", " for i in [0, 1]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_1\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (325, 875)\n", "imageAnalyser.span = (500, 500)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = Ncount_std, fmt='ob')\n", "#plt.xlabel('')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()\n", "\n", "# DB.create_global(shotNum, dataSet)\n", "# DB.add_data(shotNum, dataSet_cropOD, engine='xarray')" ] }, { "cell_type": "code", "execution_count": 29, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "
<xarray.DataArray 'OD' (final_horz_freq: 1)>\n",
       "array([28952.76637914])\n",
       "Coordinates:\n",
       "  * final_horz_freq  (final_horz_freq) float64 104.1
" ], "text/plain": [ "\n", "array([28952.76637914])\n", "Coordinates:\n", " * final_horz_freq (final_horz_freq) float64 104.1" ] }, "execution_count": 29, "metadata": {}, "output_type": "execute_result" } ], "source": [ "Ncount_mean.where(Ncount_mean==Ncount_mean.max(), drop=True)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Scan final vert amp" ] }, { "cell_type": "code", "execution_count": 30, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'final_vert_amp': array([0.035, 0.037, 0.039, 0.041, 0.043, 0.045, 0.047, 0.049, 0.051,\n", " 0.053, 0.055, 0.057, 0.059, 0.061, 0.063]), 'runs': array([0., 1., 2.])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0021\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i])\n", " for i in [0, 1]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_1\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (325, 875)\n", "imageAnalyser.span = (500, 500)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = Ncount_std, fmt='ob')\n", "#plt.xlabel('')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()\n", "\n", "# DB.create_global(shotNum, dataSet)\n", "# DB.add_data(shotNum, dataSet_cropOD, engine='xarray')" ] }, { "cell_type": "code", "execution_count": 31, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "
<xarray.DataArray 'OD' (final_vert_amp: 1)>\n",
       "array([29676.45060443])\n",
       "Coordinates:\n",
       "  * final_vert_amp  (final_vert_amp) float64 0.045
" ], "text/plain": [ "\n", "array([29676.45060443])\n", "Coordinates:\n", " * final_vert_amp (final_vert_amp) float64 0.045" ] }, "execution_count": 31, "metadata": {}, "output_type": "execute_result" } ], "source": [ "Ncount_mean.where(Ncount_mean==Ncount_mean.max(), drop=True)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Evaporative Cooling" ] }, { "cell_type": "code", "execution_count": 32, "metadata": {}, "outputs": [], "source": [ "img_dir = 'C:/Users/control/DyLab/Experiments/DyBEC/'\n", "# img_dir = '//DyLabNAS/Data/'\n", "SequenceName = \"Evaporative_Cooling\"\n", "folderPath = img_dir + SequenceName + \"/\" + get_date()\n", "\n", "mongoDB = mongoClient[SequenceName]\n", "\n", "DB = MongoDB(mongoClient, mongoDB, date=get_date())" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "# Measure trap frequency at various points of evap 2" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Horz TF due to arm 1: blink on modulation = 0, blink_off_modulation = 0.35 in 700 µs, hold of 1 s" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Truncation: 0.5" ] }, { "cell_type": "code", "execution_count": 56, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'mod_blink_on_time': array([0.005, 0.006, 0.007, 0.008, 0.009, 0.01 , 0.011, 0.012, 0.013,\n", " 0.014, 0.015, 0.016, 0.017, 0.018, 0.019]), 'runs': array([0., 1., 2., 3.])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0004\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis = ['sweep_start_freq', 'sweep_stop_freq'])\n", " for i in [0]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_0\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (800, 900)\n", "imageAnalyser.span = (300, 300)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = None, fmt='ob')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 57, "metadata": {}, "outputs": [], "source": [ "dataSet_cropOD_chunk = dataSet_cropOD.chunk((1, 300, 300))\n", "fitAnalyser = FitAnalyser(\"Gaussian-2D\", fitDim=2)\n", "params = fitAnalyser.guess(dataSet_cropOD_chunk, dask=\"parallelized\")\n", "fitResult = fitAnalyser.fit(dataSet_cropOD_chunk, params, dask=\"parallelized\").load()" ] }, { "cell_type": "code", "execution_count": 58, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "val = fitAnalyser.get_fit_value(fitResult)\n", "std = fitAnalyser.get_fit_std(fitResult)\n", "\n", "fitCurve = fitAnalyser.eval(fitResult, x=np.arange(300), y=np.arange(300), dask=\"parallelized\").load()\n", "\n", "# dataKey = 'sigmax'\n", "# dataKey = 'centerx'\n", "# dataKey = 'sigmay'\n", "dataKey = 'centery'\n", "\n", "# val_mean = val[dataKey].mean(dim='runs')\n", "# std_mean = val[dataKey].std(dim='runs')\n", "\n", "val_mean = calculate_mean(val[dataKey])\n", "std_mean = calculate_std(val[dataKey])\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "\n", "val_mean.plot.errorbar(yerr=std_mean, fmt='--ob')\n", "\n", "plt.grid()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 61, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "f = 303.5930 ± 6.9704 Hz\n" ] } ], "source": [ "def damp_osci(t, t0, A, B, nu, gamma):\n", " return A * np.exp(-gamma*t)*np.sin(2*np.pi*nu*(t-t0)) + B\n", "\n", "#yvals = val_mean.sel(blink_on_time=slice(0.005, 0.025))\n", "#yvals_std = std_mean.sel(blink_on_time=slice(0.005, 0.025))\n", "#xvals = dataSet_cropOD[scanAxis[0]].sel(blink_on_time=slice(0.005, 0.025))\n", "\n", "fitted_qtys_1 = val_mean.to_numpy()\n", "fitted_qtys_err_1 = std_mean.to_numpy()\n", "scan_para = dataSet_cropOD[scanAxis[0]].to_numpy()\n", "\n", "plt.figure()\n", "popt_x, pcov_x = curve_fit(damp_osci, scan_para, fitted_qtys_1, np.array([0, 1, 148, 1e2, 0.1]))\n", "freqdata = np.linspace(0.005, 20e-3, 500)\n", "plt.plot(freqdata, damp_osci(freqdata, *popt_x), 'g--',label='fit: t0=%5.3f, A=%5.3f, B=%5.3f, nu=%5.3f, Gamma=%5.3f' % tuple(popt_x))\n", "plt.errorbar(scan_para, fitted_qtys_1, yerr=fitted_qtys_err_1, fmt='or')\n", "plt.xlabel('hold time after switch on the trap (s)')\n", "plt.ylabel('Center along gravity direction (pixels)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "#plt.ylim([0,750])\n", "#plt.xlim([0.004, 0.025])\n", "#plt.legend(prop={'size': 14})\n", "plt.show()\n", "\n", "f_x = popt_x[3]\n", "df_x = pcov_x[3][3]**0.5\n", "\n", "print('f = %.4f \\u00B1 %.4f Hz'% tuple([np.abs(f_x),df_x]))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Truncation: 0.55" ] }, { "cell_type": "code", "execution_count": 62, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'mod_blink_on_time': array([0.005, 0.006, 0.007, 0.008, 0.009, 0.01 , 0.011, 0.012, 0.013,\n", " 0.014, 0.015, 0.016, 0.017, 0.018, 0.019]), 'runs': array([0., 1., 2., 3.])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0005\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis = ['sweep_start_freq', 'sweep_stop_freq'])\n", " for i in [0]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_0\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (800, 900)\n", "imageAnalyser.span = (300, 300)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = Ncount_std, fmt='ob')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 63, "metadata": {}, "outputs": [], "source": [ "dataSet_cropOD_chunk = dataSet_cropOD.chunk((1, 1, 300, 300))\n", "fitAnalyser = FitAnalyser(\"Gaussian-2D\", fitDim=2)\n", "params = fitAnalyser.guess(dataSet_cropOD_chunk, dask=\"parallelized\")\n", "fitResult = fitAnalyser.fit(dataSet_cropOD_chunk, params, dask=\"parallelized\").load()" ] }, { "cell_type": "code", "execution_count": 64, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "val = fitAnalyser.get_fit_value(fitResult)\n", "std = fitAnalyser.get_fit_std(fitResult)\n", "\n", "fitCurve = fitAnalyser.eval(fitResult, x=np.arange(300), y=np.arange(300), dask=\"parallelized\").load()\n", "\n", "# dataKey = 'sigmax'\n", "# dataKey = 'centerx'\n", "# dataKey = 'sigmay'\n", "dataKey = 'centery'\n", "\n", "# val_mean = val[dataKey].mean(dim='runs')\n", "# std_mean = val[dataKey].std(dim='runs')\n", "\n", "val_mean = calculate_mean(val[dataKey])\n", "std_mean = calculate_std(val[dataKey])\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "\n", "val_mean.plot.errorbar(yerr=std_mean, fmt='--ob')\n", "\n", "plt.grid()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 67, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "f = 286.0152 ± 2.5433 Hz\n" ] } ], "source": [ "def damp_osci(t, t0, A, B, nu, gamma):\n", " return A * np.exp(-gamma*t)*np.sin(2*np.pi*nu*(t-t0)) + B\n", "\n", "yvals = val_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "yvals_std = std_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "xvals = dataSet_cropOD[scanAxis[0]]#.sel(blink_on_time=slice(0.005, 0.025))\n", "\n", "fitted_qtys_1 = yvals.to_numpy()\n", "fitted_qtys_err_1 = yvals_std.to_numpy()\n", "scan_para = xvals.to_numpy()\n", "\n", "plt.figure()\n", "popt_x, pcov_x = curve_fit(damp_osci, scan_para, fitted_qtys_1, np.array([0, 3, 145, 1e2, 0.1]))\n", "freqdata = np.linspace(0.005,19e-3, 500)\n", "plt.plot(freqdata, damp_osci(freqdata, *popt_x), 'g--',label='fit: t0=%5.3f, A=%5.3f, B=%5.3f, nu=%5.3f, Gamma=%5.3f' % tuple(popt_x))\n", "plt.errorbar(scan_para, fitted_qtys_1, yerr=fitted_qtys_err_1, fmt='or')\n", "plt.xlabel('hold time after switch on the trap (s)')\n", "plt.ylabel('Center along gravity direction (pixels)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "#plt.ylim([0,750])\n", "#plt.xlim([0.004, 0.025])\n", "#plt.legend(prop={'size': 14})\n", "plt.show()\n", "\n", "f_x = popt_x[3]\n", "df_x = pcov_x[3][3]**0.5\n", "\n", "print('f = %.4f \\u00B1 %.4f Hz'% tuple([np.abs(f_x),df_x]))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Truncation: 0.6" ] }, { "cell_type": "code", "execution_count": 69, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'mod_blink_on_time': array([0.005 , 0.0057, 0.0064, 0.0071, 0.0078, 0.0085, 0.0092, 0.0099,\n", " 0.0106, 0.0113, 0.012 , 0.0127, 0.0134, 0.0141, 0.0148, 0.0155,\n", " 0.0162, 0.0169, 0.0176, 0.0183, 0.019 , 0.0197]), 'runs': array([0., 1., 2., 3.])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0008\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis = ['sweep_start_freq', 'sweep_stop_freq'])\n", " for i in [0]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_0\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (800, 900)\n", "imageAnalyser.span = (300, 300)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = None, fmt='ob')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 70, "metadata": {}, "outputs": [], "source": [ "dataSet_cropOD_chunk = dataSet_cropOD.chunk((1, 1, 300, 300))\n", "fitAnalyser = FitAnalyser(\"Gaussian-2D\", fitDim=2)\n", "params = fitAnalyser.guess(dataSet_cropOD_chunk, dask=\"parallelized\")\n", "fitResult = fitAnalyser.fit(dataSet_cropOD_chunk, params, dask=\"parallelized\").load()" ] }, { "cell_type": "code", "execution_count": 71, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "val = fitAnalyser.get_fit_value(fitResult)\n", "std = fitAnalyser.get_fit_std(fitResult)\n", "\n", "fitCurve = fitAnalyser.eval(fitResult, x=np.arange(300), y=np.arange(300), dask=\"parallelized\").load()\n", "\n", "# dataKey = 'sigmax'\n", "# dataKey = 'centerx'\n", "# dataKey = 'sigmay'\n", "dataKey = 'centery'\n", "\n", "# val_mean = val[dataKey].mean(dim='runs')\n", "# std_mean = val[dataKey].std(dim='runs')\n", "\n", "val_mean = calculate_mean(val[dataKey])\n", "std_mean = calculate_std(val[dataKey])\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "\n", "val_mean.plot.errorbar(yerr=std_mean, fmt='--ob')\n", "\n", "plt.grid()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 73, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "f = 272.6675 ± 0.6739 Hz\n" ] } ], "source": [ "def damp_osci(t, t0, A, B, nu, gamma):\n", " return A * np.exp(-gamma*t)*np.sin(2*np.pi*nu*(t-t0)) + B\n", "\n", "yvals = val_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "yvals_std = std_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "xvals = dataSet_cropOD[scanAxis[0]]#.sel(blink_on_time=slice(0.005, 0.025))\n", "\n", "fitted_qtys_1 = yvals.to_numpy()\n", "fitted_qtys_err_1 = yvals_std.to_numpy()\n", "scan_para = xvals.to_numpy()\n", "\n", "plt.figure()\n", "popt_x, pcov_x = curve_fit(damp_osci, scan_para, fitted_qtys_1, np.array([0, 3, 145, 1e2, 0.1]))\n", "freqdata = np.linspace(0.005, 20e-3, 500)\n", "plt.plot(freqdata, damp_osci(freqdata, *popt_x), 'g--',label='fit: t0=%5.3f, A=%5.3f, B=%5.3f, nu=%5.3f, Gamma=%5.3f' % tuple(popt_x))\n", "plt.errorbar(scan_para, fitted_qtys_1, yerr=fitted_qtys_err_1, fmt='or')\n", "plt.xlabel('hold time after switch on the trap (s)')\n", "plt.ylabel('Center along gravity direction (pixels)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "#plt.ylim([0,750])\n", "#plt.xlim([0.004, 0.025])\n", "#plt.legend(prop={'size': 14})\n", "plt.show()\n", "\n", "f_x = popt_x[3]\n", "df_x = pcov_x[3][3]**0.5\n", "\n", "print('f = %.4f \\u00B1 %.4f Hz'% tuple([np.abs(f_x),df_x]))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Truncation: 0.65" ] }, { "cell_type": "code", "execution_count": 74, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'mod_blink_on_time': array([0.005 , 0.0057, 0.0064, 0.0071, 0.0078, 0.0085, 0.0092, 0.0099,\n", " 0.0106, 0.0113, 0.012 , 0.0127, 0.0134, 0.0141, 0.0148, 0.0155,\n", " 0.0162, 0.0169, 0.0176, 0.0183, 0.019 , 0.0197]), 'runs': array([0., 1., 2., 3.])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0009\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis = ['sweep_start_freq', 'sweep_stop_freq'])\n", " for i in [0]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_0\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (800, 900)\n", "imageAnalyser.span = (300, 300)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = None, fmt='ob')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 75, "metadata": {}, "outputs": [], "source": [ "dataSet_cropOD_chunk = dataSet_cropOD.chunk((1, 1, 300, 300))\n", "fitAnalyser = FitAnalyser(\"Gaussian-2D\", fitDim=2)\n", "params = fitAnalyser.guess(dataSet_cropOD_chunk, dask=\"parallelized\")\n", "fitResult = fitAnalyser.fit(dataSet_cropOD_chunk, params, dask=\"parallelized\").load()" ] }, { "cell_type": "code", "execution_count": 76, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "val = fitAnalyser.get_fit_value(fitResult)\n", "std = fitAnalyser.get_fit_std(fitResult)\n", "\n", "fitCurve = fitAnalyser.eval(fitResult, x=np.arange(300), y=np.arange(300), dask=\"parallelized\").load()\n", "\n", "# dataKey = 'sigmax'\n", "# dataKey = 'centerx'\n", "# dataKey = 'sigmay'\n", "dataKey = 'centery'\n", "\n", "# val_mean = val[dataKey].mean(dim='runs')\n", "# std_mean = val[dataKey].std(dim='runs')\n", "\n", "val_mean = calculate_mean(val[dataKey])\n", "std_mean = calculate_std(val[dataKey])\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "\n", "val_mean.plot.errorbar(yerr=std_mean, fmt='--ob')\n", "\n", "plt.grid()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 79, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "f = 253.6669 ± 0.5183 Hz\n" ] } ], "source": [ "def damp_osci(t, t0, A, B, nu, gamma):\n", " return A * np.exp(-gamma*t)*np.sin(2*np.pi*nu*(t-t0)) + B\n", "\n", "yvals = val_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "yvals_std = std_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "xvals = dataSet_cropOD[scanAxis[0]]#.sel(blink_on_time=slice(0.005, 0.025))\n", "\n", "fitted_qtys_1 = yvals.to_numpy()\n", "fitted_qtys_err_1 = yvals_std.to_numpy()\n", "scan_para = xvals.to_numpy()\n", "\n", "plt.figure()\n", "popt_x, pcov_x = curve_fit(damp_osci, scan_para, fitted_qtys_1, np.array([0, 3, 145, 1e2, 0.1]))\n", "freqdata = np.linspace(0.005, 20e-3, 500)\n", "plt.plot(freqdata, damp_osci(freqdata, *popt_x), 'g--',label='fit: t0=%5.3f, A=%5.3f, B=%5.3f, nu=%5.3f, Gamma=%5.3f' % tuple(popt_x))\n", "plt.errorbar(scan_para, fitted_qtys_1, yerr=fitted_qtys_err_1, fmt='or')\n", "plt.xlabel('hold time after switch on the trap (s)')\n", "plt.ylabel('Center along gravity direction (pixels)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "#plt.ylim([0,750])\n", "#plt.xlim([0.004, 0.025])\n", "#plt.legend(prop={'size': 14})\n", "plt.show()\n", "\n", "f_x = popt_x[3]\n", "df_x = pcov_x[3][3]**0.5\n", "\n", "print('f = %.4f \\u00B1 %.4f Hz'% tuple([np.abs(f_x),df_x]))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Truncation: 0.7" ] }, { "cell_type": "code", "execution_count": 83, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'mod_blink_on_time': array([0.005 , 0.0057, 0.0064, 0.0071, 0.0078, 0.0085, 0.0092, 0.0099,\n", " 0.0106, 0.0113, 0.012 , 0.0127, 0.0134, 0.0141, 0.0148, 0.0155,\n", " 0.0162, 0.0169, 0.0176, 0.0183, 0.019 , 0.0197]), 'runs': array([0., 1., 2., 3.])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0010\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis = ['sweep_start_freq', 'sweep_stop_freq'])\n", " for i in [0]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_0\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (800, 900)\n", "imageAnalyser.span = (300, 300)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = None, fmt='ob')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 84, "metadata": {}, "outputs": [], "source": [ "dataSet_cropOD_chunk = dataSet_cropOD.chunk((1, 1, 300, 300))\n", "fitAnalyser = FitAnalyser(\"Gaussian-2D\", fitDim=2)\n", "params = fitAnalyser.guess(dataSet_cropOD_chunk, dask=\"parallelized\")\n", "fitResult = fitAnalyser.fit(dataSet_cropOD_chunk, params, dask=\"parallelized\").load()" ] }, { "cell_type": "code", "execution_count": 85, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "val = fitAnalyser.get_fit_value(fitResult)\n", "std = fitAnalyser.get_fit_std(fitResult)\n", "\n", "fitCurve = fitAnalyser.eval(fitResult, x=np.arange(300), y=np.arange(300), dask=\"parallelized\").load()\n", "\n", "# dataKey = 'sigmax'\n", "# dataKey = 'centerx'\n", "# dataKey = 'sigmay'\n", "dataKey = 'centery'\n", "\n", "# val_mean = val[dataKey].mean(dim='runs')\n", "# std_mean = val[dataKey].std(dim='runs')\n", "\n", "val_mean = calculate_mean(val[dataKey])\n", "std_mean = calculate_std(val[dataKey])\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "\n", "val_mean.plot.errorbar(yerr=std_mean, fmt='--ob')\n", "\n", "plt.grid()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 87, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "f = 238.8665 ± 0.3901 Hz\n" ] } ], "source": [ "def damp_osci(t, t0, A, B, nu, gamma):\n", " return A * np.exp(-gamma*t)*np.sin(2*np.pi*nu*(t-t0)) + B\n", "\n", "yvals = val_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "yvals_std = std_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "xvals = dataSet_cropOD[scanAxis[0]]#.sel(blink_on_time=slice(0.005, 0.025))\n", "\n", "fitted_qtys_1 = yvals.to_numpy()\n", "scan_para = xvals.to_numpy()\n", "fitted_qtys_err_1 = yvals_std.to_numpy()\n", "\n", "\n", "plt.figure()\n", "popt_x, pcov_x = curve_fit(damp_osci, scan_para, fitted_qtys_1, np.array([0, 3, 147, 3e2, 0.1]))\n", "freqdata = np.linspace(0.005, 20e-3, 500)\n", "plt.plot(freqdata, damp_osci(freqdata, *popt_x), 'g--',label='fit: t0=%5.3f, A=%5.3f, B=%5.3f, nu=%5.3f, Gamma=%5.3f' % tuple(popt_x))\n", "plt.errorbar(scan_para, fitted_qtys_1, yerr=fitted_qtys_err_1, fmt='or')\n", "plt.xlabel('hold time after switch on the trap (s)')\n", "plt.ylabel('Center along gravity direction (pixels)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "#plt.ylim([0,750])\n", "#plt.xlim([0.004, 0.025])\n", "#plt.legend(prop={'size': 14})\n", "plt.show()\n", "\n", "f_x = popt_x[3]\n", "df_x = pcov_x[3][3]**0.5\n", "\n", "print('f = %.4f \\u00B1 %.4f Hz'% tuple([np.abs(f_x),df_x]))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Truncation: 0.725" ] }, { "cell_type": "code", "execution_count": 93, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'mod_blink_on_time': array([0.005 , 0.0057, 0.0064, 0.0071, 0.0078, 0.0085, 0.0092, 0.0099,\n", " 0.0106, 0.0113, 0.012 , 0.0127, 0.0134, 0.0141, 0.0148, 0.0155,\n", " 0.0162, 0.0169, 0.0176, 0.0183, 0.019 , 0.0197]), 'runs': array([0., 1., 2., 3.])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0011\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis = ['sweep_start_freq', 'sweep_stop_freq'])\n", " for i in [0]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_0\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (800, 900)\n", "imageAnalyser.span = (300, 300)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = None, fmt='ob')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 94, "metadata": {}, "outputs": [], "source": [ "dataSet_cropOD_chunk = dataSet_cropOD.chunk((1, 1, 300, 300))\n", "fitAnalyser = FitAnalyser(\"Gaussian-2D\", fitDim=2)\n", "params = fitAnalyser.guess(dataSet_cropOD_chunk, dask=\"parallelized\")\n", "fitResult = fitAnalyser.fit(dataSet_cropOD_chunk, params, dask=\"parallelized\").load()" ] }, { "cell_type": "code", "execution_count": 95, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "val = fitAnalyser.get_fit_value(fitResult)\n", "std = fitAnalyser.get_fit_std(fitResult)\n", "\n", "fitCurve = fitAnalyser.eval(fitResult, x=np.arange(300), y=np.arange(300), dask=\"parallelized\").load()\n", "\n", "# dataKey = 'sigmax'\n", "# dataKey = 'centerx'\n", "# dataKey = 'sigmay'\n", "dataKey = 'centery'\n", "\n", "# val_mean = val[dataKey].mean(dim='runs')\n", "# std_mean = val[dataKey].std(dim='runs')\n", "\n", "val_mean = calculate_mean(val[dataKey])\n", "std_mean = calculate_std(val[dataKey])\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "\n", "val_mean.plot.errorbar(yerr=std_mean, fmt='--ob')\n", "\n", "plt.grid()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 98, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "f = 232.4375 ± 0.3994 Hz\n" ] } ], "source": [ "def damp_osci(t, t0, A, B, nu, gamma):\n", " return A * np.exp(-gamma*t)*np.sin(2*np.pi*nu*(t-t0)) + B\n", "\n", "yvals = val_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "yvals_std = std_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "xvals = dataSet_cropOD[scanAxis[0]]#.sel(blink_on_time=slice(0.005, 0.025))\n", "\n", "fitted_qtys_1 = yvals.to_numpy()\n", "scan_para = xvals.to_numpy()\n", "fitted_qtys_err_1 = yvals_std.to_numpy()\n", "\n", "\n", "plt.figure()\n", "popt_x, pcov_x = curve_fit(damp_osci, scan_para, fitted_qtys_1, np.array([0, 3, 147, 3e2, 0.1]))\n", "freqdata = np.linspace(0.005, 20e-3, 500)\n", "plt.plot(freqdata, damp_osci(freqdata, *popt_x), 'g--',label='fit: t0=%5.3f, A=%5.3f, B=%5.3f, nu=%5.3f, Gamma=%5.3f' % tuple(popt_x))\n", "plt.errorbar(scan_para, fitted_qtys_1, yerr=fitted_qtys_err_1, fmt='or')\n", "plt.xlabel('hold time after switch on the trap (s)')\n", "plt.ylabel('Center along gravity direction (pixels)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "#plt.ylim([0,750])\n", "#plt.xlim([0.004, 0.025])\n", "#plt.legend(prop={'size': 14})\n", "plt.show()\n", "\n", "f_x = popt_x[3]\n", "df_x = pcov_x[3][3]**0.5\n", "\n", "print('f = %.4f \\u00B1 %.4f Hz'% tuple([np.abs(f_x),df_x]))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Truncation: 0.75" ] }, { "cell_type": "code", "execution_count": 99, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The detected scaning axes and values are: \n", "\n", "{'mod_blink_on_time': array([0.005 , 0.0057, 0.0064, 0.0071, 0.0078, 0.0085, 0.0092, 0.0099,\n", " 0.0106, 0.0113, 0.012 , 0.0127, 0.0134, 0.0141, 0.0148, 0.0155,\n", " 0.0162, 0.0169, 0.0176, 0.0183, 0.019 , 0.0197]), 'runs': array([0., 1., 2., 3.])}\n" ] }, { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0012\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis = ['sweep_start_freq', 'sweep_stop_freq'])\n", " for i in [0]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_0\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (800, 900)\n", "imageAnalyser.span = (300, 300)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = None, fmt='ob')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 100, "metadata": {}, "outputs": [], "source": [ "dataSet_cropOD_chunk = dataSet_cropOD.chunk((1, 1, 300, 300))\n", "fitAnalyser = FitAnalyser(\"Gaussian-2D\", fitDim=2)\n", "params = fitAnalyser.guess(dataSet_cropOD_chunk, dask=\"parallelized\")\n", "fitResult = fitAnalyser.fit(dataSet_cropOD_chunk, params, dask=\"parallelized\").load()" ] }, { "cell_type": "code", "execution_count": 101, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "val = fitAnalyser.get_fit_value(fitResult)\n", "std = fitAnalyser.get_fit_std(fitResult)\n", "\n", "fitCurve = fitAnalyser.eval(fitResult, x=np.arange(300), y=np.arange(300), dask=\"parallelized\").load()\n", "\n", "# dataKey = 'sigmax'\n", "# dataKey = 'centerx'\n", "# dataKey = 'sigmay'\n", "dataKey = 'centery'\n", "\n", "# val_mean = val[dataKey].mean(dim='runs')\n", "# std_mean = val[dataKey].std(dim='runs')\n", "\n", "val_mean = calculate_mean(val[dataKey])\n", "std_mean = calculate_std(val[dataKey])\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "\n", "val_mean.plot.errorbar(yerr=std_mean, fmt='--ob')\n", "\n", "plt.grid()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 103, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "f = 224.9906 ± 0.4995 Hz\n" ] } ], "source": [ "def damp_osci(t, t0, A, B, nu, gamma):\n", " return A * np.exp(-gamma*t)*np.sin(2*np.pi*nu*(t-t0)) + B\n", "\n", "yvals = val_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "yvals_std = std_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "xvals = dataSet_cropOD[scanAxis[0]]#.sel(blink_on_time=slice(0.005, 0.025))\n", "\n", "fitted_qtys_1 = yvals.to_numpy()\n", "scan_para = xvals.to_numpy()\n", "fitted_qtys_err_1 = yvals_std.to_numpy()\n", "\n", "\n", "plt.figure()\n", "popt_x, pcov_x = curve_fit(damp_osci, scan_para, fitted_qtys_1, np.array([0, 3, 147, 3e2, 0.1]))\n", "freqdata = np.linspace(0.005, 20e-3, 500)\n", "plt.plot(freqdata, damp_osci(freqdata, *popt_x), 'g--',label='fit: t0=%5.3f, A=%5.3f, B=%5.3f, nu=%5.3f, Gamma=%5.3f' % tuple(popt_x))\n", "plt.errorbar(scan_para, fitted_qtys_1, yerr=fitted_qtys_err_1, fmt='or')\n", "plt.xlabel('hold time after switch on the trap (s)')\n", "plt.ylabel('Center along gravity direction (pixels)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "#plt.ylim([0,750])\n", "#plt.xlim([0.004, 0.025])\n", "#plt.legend(prop={'size': 14})\n", "plt.show()\n", "\n", "f_x = popt_x[3]\n", "df_x = pcov_x[3][3]**0.5\n", "\n", "print('f = %.4f \\u00B1 %.4f Hz'% tuple([np.abs(f_x),df_x]))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Truncation: 0.775" ] }, { "cell_type": "code", "execution_count": 128, "metadata": {}, "outputs": [ { "ename": "OSError", "evalue": "[Errno group not found: images] 'images'", "output_type": "error", "traceback": [ "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m", "\u001b[1;31mOSError\u001b[0m Traceback (most recent call last)", "Input \u001b[1;32mIn [128]\u001b[0m, in \u001b[0;36m\u001b[1;34m()\u001b[0m\n\u001b[0;32m 2\u001b[0m shotNum \u001b[38;5;241m=\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m0013\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[0;32m 3\u001b[0m filePath \u001b[38;5;241m=\u001b[39m folderPath \u001b[38;5;241m+\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m/\u001b[39m\u001b[38;5;124m\"\u001b[39m \u001b[38;5;241m+\u001b[39m shotNum \u001b[38;5;241m+\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m/*.h5\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m----> 5\u001b[0m dataSetDict \u001b[38;5;241m=\u001b[39m {\n\u001b[0;32m 6\u001b[0m dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis \u001b[38;5;241m=\u001b[39m [\u001b[38;5;124m'\u001b[39m\u001b[38;5;124msweep_start_freq\u001b[39m\u001b[38;5;124m'\u001b[39m, \u001b[38;5;124m'\u001b[39m\u001b[38;5;124msweep_stop_freq\u001b[39m\u001b[38;5;124m'\u001b[39m])\n\u001b[0;32m 7\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m i \u001b[38;5;129;01min\u001b[39;00m [\u001b[38;5;241m0\u001b[39m]\n\u001b[0;32m 8\u001b[0m }\n\u001b[0;32m 10\u001b[0m dataSet \u001b[38;5;241m=\u001b[39m dataSetDict[\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mcamera_0\u001b[39m\u001b[38;5;124m\"\u001b[39m]\n\u001b[0;32m 12\u001b[0m print_scanAxis(dataSet)\n", "Input \u001b[1;32mIn [128]\u001b[0m, in \u001b[0;36m\u001b[1;34m(.0)\u001b[0m\n\u001b[0;32m 2\u001b[0m shotNum \u001b[38;5;241m=\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m0013\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[0;32m 3\u001b[0m filePath \u001b[38;5;241m=\u001b[39m folderPath \u001b[38;5;241m+\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m/\u001b[39m\u001b[38;5;124m\"\u001b[39m \u001b[38;5;241m+\u001b[39m shotNum \u001b[38;5;241m+\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m/*.h5\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[0;32m 5\u001b[0m dataSetDict \u001b[38;5;241m=\u001b[39m {\n\u001b[1;32m----> 6\u001b[0m dskey[groupList[i]]: \u001b[43mread_hdf5_file\u001b[49m\u001b[43m(\u001b[49m\u001b[43mfilePath\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mgroupList\u001b[49m\u001b[43m[\u001b[49m\u001b[43mi\u001b[49m\u001b[43m]\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mexcludeAxis\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43m \u001b[49m\u001b[43m[\u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43msweep_start_freq\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43msweep_stop_freq\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m]\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m 7\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m i \u001b[38;5;129;01min\u001b[39;00m [\u001b[38;5;241m0\u001b[39m]\n\u001b[0;32m 8\u001b[0m }\n\u001b[0;32m 10\u001b[0m dataSet \u001b[38;5;241m=\u001b[39m dataSetDict[\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mcamera_0\u001b[39m\u001b[38;5;124m\"\u001b[39m]\n\u001b[0;32m 12\u001b[0m print_scanAxis(dataSet)\n", "File \u001b[1;32mZ:\\Dy_Lab\\Data\\Analysis\\2023\\07\\31\\DataContainer\\ReadData.py:170\u001b[0m, in \u001b[0;36mread_hdf5_file\u001b[1;34m(filePath, group, datesetOfGlobal, preprocess, join, parallel, engine, phony_dims, excludeAxis, maxFileNum, **kwargs)\u001b[0m\n\u001b[0;32m 167\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m 168\u001b[0m kwargs\u001b[38;5;241m.\u001b[39mupdate({\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mpreprocess\u001b[39m\u001b[38;5;124m'\u001b[39m:preprocess})\n\u001b[1;32m--> 170\u001b[0m ds \u001b[38;5;241m=\u001b[39m xr\u001b[38;5;241m.\u001b[39mopen_mfdataset(fullFilePath, \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mkwargs)\n\u001b[0;32m 172\u001b[0m newDimKey \u001b[38;5;241m=\u001b[39m np\u001b[38;5;241m.\u001b[39mappend([\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mx\u001b[39m\u001b[38;5;124m'\u001b[39m, \u001b[38;5;124m'\u001b[39m\u001b[38;5;124my\u001b[39m\u001b[38;5;124m'\u001b[39m, \u001b[38;5;124m'\u001b[39m\u001b[38;5;124mz\u001b[39m\u001b[38;5;124m'\u001b[39m], [ \u001b[38;5;28mchr\u001b[39m(i) \u001b[38;5;28;01mfor\u001b[39;00m i \u001b[38;5;129;01min\u001b[39;00m \u001b[38;5;28mrange\u001b[39m(\u001b[38;5;241m97\u001b[39m, \u001b[38;5;241m97\u001b[39m\u001b[38;5;241m+\u001b[39m\u001b[38;5;241m23\u001b[39m)])\n\u001b[0;32m 174\u001b[0m oldDimKey \u001b[38;5;241m=\u001b[39m np\u001b[38;5;241m.\u001b[39msort(\n\u001b[0;32m 175\u001b[0m [\n\u001b[0;32m 176\u001b[0m key \n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 179\u001b[0m ]\n\u001b[0;32m 180\u001b[0m )\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\xarray\\backends\\api.py:990\u001b[0m, in \u001b[0;36mopen_mfdataset\u001b[1;34m(paths, chunks, concat_dim, compat, preprocess, engine, data_vars, coords, combine, parallel, join, attrs_file, combine_attrs, **kwargs)\u001b[0m\n\u001b[0;32m 985\u001b[0m datasets \u001b[38;5;241m=\u001b[39m [preprocess(ds) \u001b[38;5;28;01mfor\u001b[39;00m ds \u001b[38;5;129;01min\u001b[39;00m datasets]\n\u001b[0;32m 987\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m parallel:\n\u001b[0;32m 988\u001b[0m \u001b[38;5;66;03m# calling compute here will return the datasets/file_objs lists,\u001b[39;00m\n\u001b[0;32m 989\u001b[0m \u001b[38;5;66;03m# the underlying datasets will still be stored as dask arrays\u001b[39;00m\n\u001b[1;32m--> 990\u001b[0m datasets, closers \u001b[38;5;241m=\u001b[39m \u001b[43mdask\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mcompute\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdatasets\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mclosers\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m 992\u001b[0m \u001b[38;5;66;03m# Combine all datasets, closing them in case of a ValueError\u001b[39;00m\n\u001b[0;32m 993\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\dask\\base.py:599\u001b[0m, in \u001b[0;36mcompute\u001b[1;34m(traverse, optimize_graph, scheduler, get, *args, **kwargs)\u001b[0m\n\u001b[0;32m 596\u001b[0m keys\u001b[38;5;241m.\u001b[39mappend(x\u001b[38;5;241m.\u001b[39m__dask_keys__())\n\u001b[0;32m 597\u001b[0m postcomputes\u001b[38;5;241m.\u001b[39mappend(x\u001b[38;5;241m.\u001b[39m__dask_postcompute__())\n\u001b[1;32m--> 599\u001b[0m results \u001b[38;5;241m=\u001b[39m schedule(dsk, keys, \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mkwargs)\n\u001b[0;32m 600\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m repack([f(r, \u001b[38;5;241m*\u001b[39ma) \u001b[38;5;28;01mfor\u001b[39;00m r, (f, a) \u001b[38;5;129;01min\u001b[39;00m \u001b[38;5;28mzip\u001b[39m(results, postcomputes)])\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\distributed\\client.py:3224\u001b[0m, in \u001b[0;36mClient.get\u001b[1;34m(self, dsk, keys, workers, allow_other_workers, resources, sync, asynchronous, direct, retries, priority, fifo_timeout, actors, **kwargs)\u001b[0m\n\u001b[0;32m 3222\u001b[0m should_rejoin \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mFalse\u001b[39;00m\n\u001b[0;32m 3223\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n\u001b[1;32m-> 3224\u001b[0m results \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mgather\u001b[49m\u001b[43m(\u001b[49m\u001b[43mpacked\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43masynchronous\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43masynchronous\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mdirect\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mdirect\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m 3225\u001b[0m \u001b[38;5;28;01mfinally\u001b[39;00m:\n\u001b[0;32m 3226\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m f \u001b[38;5;129;01min\u001b[39;00m futures\u001b[38;5;241m.\u001b[39mvalues():\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\distributed\\client.py:2359\u001b[0m, in \u001b[0;36mClient.gather\u001b[1;34m(self, futures, errors, direct, asynchronous)\u001b[0m\n\u001b[0;32m 2357\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m 2358\u001b[0m local_worker \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m\n\u001b[1;32m-> 2359\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43msync\u001b[49m\u001b[43m(\u001b[49m\n\u001b[0;32m 2360\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_gather\u001b[49m\u001b[43m,\u001b[49m\n\u001b[0;32m 2361\u001b[0m \u001b[43m \u001b[49m\u001b[43mfutures\u001b[49m\u001b[43m,\u001b[49m\n\u001b[0;32m 2362\u001b[0m \u001b[43m \u001b[49m\u001b[43merrors\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43merrors\u001b[49m\u001b[43m,\u001b[49m\n\u001b[0;32m 2363\u001b[0m \u001b[43m \u001b[49m\u001b[43mdirect\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mdirect\u001b[49m\u001b[43m,\u001b[49m\n\u001b[0;32m 2364\u001b[0m \u001b[43m \u001b[49m\u001b[43mlocal_worker\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mlocal_worker\u001b[49m\u001b[43m,\u001b[49m\n\u001b[0;32m 2365\u001b[0m \u001b[43m \u001b[49m\u001b[43masynchronous\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43masynchronous\u001b[49m\u001b[43m,\u001b[49m\n\u001b[0;32m 2366\u001b[0m \u001b[43m\u001b[49m\u001b[43m)\u001b[49m\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\distributed\\utils.py:351\u001b[0m, in \u001b[0;36mSyncMethodMixin.sync\u001b[1;34m(self, func, asynchronous, callback_timeout, *args, **kwargs)\u001b[0m\n\u001b[0;32m 349\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m future\n\u001b[0;32m 350\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m--> 351\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m sync(\n\u001b[0;32m 352\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mloop, func, \u001b[38;5;241m*\u001b[39margs, callback_timeout\u001b[38;5;241m=\u001b[39mcallback_timeout, \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mkwargs\n\u001b[0;32m 353\u001b[0m )\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\distributed\\utils.py:418\u001b[0m, in \u001b[0;36msync\u001b[1;34m(loop, func, callback_timeout, *args, **kwargs)\u001b[0m\n\u001b[0;32m 416\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m error:\n\u001b[0;32m 417\u001b[0m typ, exc, tb \u001b[38;5;241m=\u001b[39m error\n\u001b[1;32m--> 418\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m exc\u001b[38;5;241m.\u001b[39mwith_traceback(tb)\n\u001b[0;32m 419\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m 420\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m result\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\distributed\\utils.py:391\u001b[0m, in \u001b[0;36msync..f\u001b[1;34m()\u001b[0m\n\u001b[0;32m 389\u001b[0m future \u001b[38;5;241m=\u001b[39m wait_for(future, callback_timeout)\n\u001b[0;32m 390\u001b[0m future \u001b[38;5;241m=\u001b[39m asyncio\u001b[38;5;241m.\u001b[39mensure_future(future)\n\u001b[1;32m--> 391\u001b[0m result \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01myield\u001b[39;00m future\n\u001b[0;32m 392\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mException\u001b[39;00m:\n\u001b[0;32m 393\u001b[0m error \u001b[38;5;241m=\u001b[39m sys\u001b[38;5;241m.\u001b[39mexc_info()\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\tornado\\gen.py:762\u001b[0m, in \u001b[0;36mRunner.run\u001b[1;34m(self)\u001b[0m\n\u001b[0;32m 759\u001b[0m exc_info \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m\n\u001b[0;32m 761\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n\u001b[1;32m--> 762\u001b[0m value \u001b[38;5;241m=\u001b[39m \u001b[43mfuture\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mresult\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m 763\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mException\u001b[39;00m:\n\u001b[0;32m 764\u001b[0m exc_info \u001b[38;5;241m=\u001b[39m sys\u001b[38;5;241m.\u001b[39mexc_info()\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\distributed\\client.py:2222\u001b[0m, in \u001b[0;36mClient._gather\u001b[1;34m(self, futures, errors, direct, local_worker)\u001b[0m\n\u001b[0;32m 2220\u001b[0m exc \u001b[38;5;241m=\u001b[39m CancelledError(key)\n\u001b[0;32m 2221\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m-> 2222\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m exception\u001b[38;5;241m.\u001b[39mwith_traceback(traceback)\n\u001b[0;32m 2223\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m exc\n\u001b[0;32m 2224\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m errors \u001b[38;5;241m==\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mskip\u001b[39m\u001b[38;5;124m\"\u001b[39m:\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\dask\\utils.py:73\u001b[0m, in \u001b[0;36mapply\u001b[1;34m()\u001b[0m\n\u001b[0;32m 42\u001b[0m \u001b[38;5;124;03m\"\"\"Apply a function given its positional and keyword arguments.\u001b[39;00m\n\u001b[0;32m 43\u001b[0m \n\u001b[0;32m 44\u001b[0m \u001b[38;5;124;03mEquivalent to ``func(*args, **kwargs)``\u001b[39;00m\n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 70\u001b[0m \u001b[38;5;124;03m>>> dsk = {'task-name': task} # adds the task to a low level Dask task graph\u001b[39;00m\n\u001b[0;32m 71\u001b[0m \u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[0;32m 72\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m kwargs:\n\u001b[1;32m---> 73\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m func(\u001b[38;5;241m*\u001b[39margs, \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mkwargs)\n\u001b[0;32m 74\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m 75\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m func(\u001b[38;5;241m*\u001b[39margs)\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\xarray\\backends\\api.py:525\u001b[0m, in \u001b[0;36mopen_dataset\u001b[1;34m()\u001b[0m\n\u001b[0;32m 513\u001b[0m decoders \u001b[38;5;241m=\u001b[39m _resolve_decoders_kwargs(\n\u001b[0;32m 514\u001b[0m decode_cf,\n\u001b[0;32m 515\u001b[0m open_backend_dataset_parameters\u001b[38;5;241m=\u001b[39mbackend\u001b[38;5;241m.\u001b[39mopen_dataset_parameters,\n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 521\u001b[0m decode_coords\u001b[38;5;241m=\u001b[39mdecode_coords,\n\u001b[0;32m 522\u001b[0m )\n\u001b[0;32m 524\u001b[0m overwrite_encoded_chunks \u001b[38;5;241m=\u001b[39m kwargs\u001b[38;5;241m.\u001b[39mpop(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124moverwrite_encoded_chunks\u001b[39m\u001b[38;5;124m\"\u001b[39m, \u001b[38;5;28;01mNone\u001b[39;00m)\n\u001b[1;32m--> 525\u001b[0m backend_ds \u001b[38;5;241m=\u001b[39m backend\u001b[38;5;241m.\u001b[39mopen_dataset(\n\u001b[0;32m 526\u001b[0m filename_or_obj,\n\u001b[0;32m 527\u001b[0m drop_variables\u001b[38;5;241m=\u001b[39mdrop_variables,\n\u001b[0;32m 528\u001b[0m \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mdecoders,\n\u001b[0;32m 529\u001b[0m \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mkwargs,\n\u001b[0;32m 530\u001b[0m )\n\u001b[0;32m 531\u001b[0m ds \u001b[38;5;241m=\u001b[39m _dataset_from_backend_dataset(\n\u001b[0;32m 532\u001b[0m backend_ds,\n\u001b[0;32m 533\u001b[0m filename_or_obj,\n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 541\u001b[0m \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mkwargs,\n\u001b[0;32m 542\u001b[0m )\n\u001b[0;32m 543\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m ds\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\xarray\\backends\\h5netcdf_.py:413\u001b[0m, in \u001b[0;36mopen_dataset\u001b[1;34m()\u001b[0m\n\u001b[0;32m 394\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mopen_dataset\u001b[39m( \u001b[38;5;66;03m# type: ignore[override] # allow LSP violation, not supporting **kwargs\u001b[39;00m\n\u001b[0;32m 395\u001b[0m \u001b[38;5;28mself\u001b[39m,\n\u001b[0;32m 396\u001b[0m filename_or_obj: \u001b[38;5;28mstr\u001b[39m \u001b[38;5;241m|\u001b[39m os\u001b[38;5;241m.\u001b[39mPathLike[Any] \u001b[38;5;241m|\u001b[39m BufferedIOBase \u001b[38;5;241m|\u001b[39m AbstractDataStore,\n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 410\u001b[0m decode_vlen_strings\u001b[38;5;241m=\u001b[39m\u001b[38;5;28;01mTrue\u001b[39;00m,\n\u001b[0;32m 411\u001b[0m ) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m Dataset:\n\u001b[0;32m 412\u001b[0m filename_or_obj \u001b[38;5;241m=\u001b[39m _normalize_path(filename_or_obj)\n\u001b[1;32m--> 413\u001b[0m store \u001b[38;5;241m=\u001b[39m H5NetCDFStore\u001b[38;5;241m.\u001b[39mopen(\n\u001b[0;32m 414\u001b[0m filename_or_obj,\n\u001b[0;32m 415\u001b[0m \u001b[38;5;28mformat\u001b[39m\u001b[38;5;241m=\u001b[39m\u001b[38;5;28mformat\u001b[39m,\n\u001b[0;32m 416\u001b[0m group\u001b[38;5;241m=\u001b[39mgroup,\n\u001b[0;32m 417\u001b[0m lock\u001b[38;5;241m=\u001b[39mlock,\n\u001b[0;32m 418\u001b[0m invalid_netcdf\u001b[38;5;241m=\u001b[39minvalid_netcdf,\n\u001b[0;32m 419\u001b[0m phony_dims\u001b[38;5;241m=\u001b[39mphony_dims,\n\u001b[0;32m 420\u001b[0m decode_vlen_strings\u001b[38;5;241m=\u001b[39mdecode_vlen_strings,\n\u001b[0;32m 421\u001b[0m )\n\u001b[0;32m 423\u001b[0m store_entrypoint \u001b[38;5;241m=\u001b[39m StoreBackendEntrypoint()\n\u001b[0;32m 425\u001b[0m ds \u001b[38;5;241m=\u001b[39m store_entrypoint\u001b[38;5;241m.\u001b[39mopen_dataset(\n\u001b[0;32m 426\u001b[0m store,\n\u001b[0;32m 427\u001b[0m mask_and_scale\u001b[38;5;241m=\u001b[39mmask_and_scale,\n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 433\u001b[0m decode_timedelta\u001b[38;5;241m=\u001b[39mdecode_timedelta,\n\u001b[0;32m 434\u001b[0m )\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\xarray\\backends\\h5netcdf_.py:176\u001b[0m, in \u001b[0;36mopen\u001b[1;34m()\u001b[0m\n\u001b[0;32m 173\u001b[0m lock \u001b[38;5;241m=\u001b[39m combine_locks([HDF5_LOCK, get_write_lock(filename)])\n\u001b[0;32m 175\u001b[0m manager \u001b[38;5;241m=\u001b[39m CachingFileManager(h5netcdf\u001b[38;5;241m.\u001b[39mFile, filename, mode\u001b[38;5;241m=\u001b[39mmode, kwargs\u001b[38;5;241m=\u001b[39mkwargs)\n\u001b[1;32m--> 176\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28mcls\u001b[39m(manager, group\u001b[38;5;241m=\u001b[39mgroup, mode\u001b[38;5;241m=\u001b[39mmode, lock\u001b[38;5;241m=\u001b[39mlock, autoclose\u001b[38;5;241m=\u001b[39mautoclose)\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\xarray\\backends\\h5netcdf_.py:127\u001b[0m, in \u001b[0;36m__init__\u001b[1;34m()\u001b[0m\n\u001b[0;32m 124\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mformat \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m\n\u001b[0;32m 125\u001b[0m \u001b[38;5;66;03m# todo: utilizing find_root_and_group seems a bit clunky\u001b[39;00m\n\u001b[0;32m 126\u001b[0m \u001b[38;5;66;03m# making filename available on h5netcdf.Group seems better\u001b[39;00m\n\u001b[1;32m--> 127\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_filename \u001b[38;5;241m=\u001b[39m find_root_and_group(\u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mds)[\u001b[38;5;241m0\u001b[39m]\u001b[38;5;241m.\u001b[39mfilename\n\u001b[0;32m 128\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mis_remote \u001b[38;5;241m=\u001b[39m is_remote_uri(\u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_filename)\n\u001b[0;32m 129\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mlock \u001b[38;5;241m=\u001b[39m ensure_lock(lock)\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\xarray\\backends\\h5netcdf_.py:187\u001b[0m, in \u001b[0;36mds\u001b[1;34m()\u001b[0m\n\u001b[0;32m 185\u001b[0m \u001b[38;5;129m@property\u001b[39m\n\u001b[0;32m 186\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mds\u001b[39m(\u001b[38;5;28mself\u001b[39m):\n\u001b[1;32m--> 187\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_acquire()\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\xarray\\backends\\h5netcdf_.py:180\u001b[0m, in \u001b[0;36m_acquire\u001b[1;34m()\u001b[0m\n\u001b[0;32m 178\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21m_acquire\u001b[39m(\u001b[38;5;28mself\u001b[39m, needs_lock\u001b[38;5;241m=\u001b[39m\u001b[38;5;28;01mTrue\u001b[39;00m):\n\u001b[0;32m 179\u001b[0m \u001b[38;5;28;01mwith\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_manager\u001b[38;5;241m.\u001b[39macquire_context(needs_lock) \u001b[38;5;28;01mas\u001b[39;00m root:\n\u001b[1;32m--> 180\u001b[0m ds \u001b[38;5;241m=\u001b[39m _nc4_require_group(\n\u001b[0;32m 181\u001b[0m root, \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_group, \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_mode, create_group\u001b[38;5;241m=\u001b[39m_h5netcdf_create_group\n\u001b[0;32m 182\u001b[0m )\n\u001b[0;32m 183\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m ds\n", "File \u001b[1;32m~\\anaconda3\\envs\\py39\\lib\\site-packages\\xarray\\backends\\netCDF4_.py:191\u001b[0m, in \u001b[0;36m_nc4_require_group\u001b[1;34m()\u001b[0m\n\u001b[0;32m 188\u001b[0m ds \u001b[38;5;241m=\u001b[39m create_group(ds, key)\n\u001b[0;32m 189\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m 190\u001b[0m \u001b[38;5;66;03m# wrap error to provide slightly more helpful message\u001b[39;00m\n\u001b[1;32m--> 191\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mOSError\u001b[39;00m(\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mgroup not found: \u001b[39m\u001b[38;5;132;01m{\u001b[39;00mkey\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m\"\u001b[39m, e)\n\u001b[0;32m 192\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m ds\n", "\u001b[1;31mOSError\u001b[0m: [Errno group not found: images] 'images'" ] } ], "source": [ "%matplotlib notebook\n", "shotNum = \"0013\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis = ['sweep_start_freq', 'sweep_stop_freq'])\n", " for i in [0]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_0\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (800, 900)\n", "imageAnalyser.span = (300, 300)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = None, fmt='ob')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "dataSet_cropOD_chunk = dataSet_cropOD.chunk((1, 1, 300, 300))\n", "fitAnalyser = FitAnalyser(\"Gaussian-2D\", fitDim=2)\n", "params = fitAnalyser.guess(dataSet_cropOD_chunk, dask=\"parallelized\")\n", "fitResult = fitAnalyser.fit(dataSet_cropOD_chunk, params, dask=\"parallelized\").load()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "val = fitAnalyser.get_fit_value(fitResult)\n", "std = fitAnalyser.get_fit_std(fitResult)\n", "\n", "fitCurve = fitAnalyser.eval(fitResult, x=np.arange(300), y=np.arange(300), dask=\"parallelized\").load()\n", "\n", "# dataKey = 'sigmax'\n", "# dataKey = 'centerx'\n", "# dataKey = 'sigmay'\n", "dataKey = 'centery'\n", "\n", "# val_mean = val[dataKey].mean(dim='runs')\n", "# std_mean = val[dataKey].std(dim='runs')\n", "\n", "val_mean = calculate_mean(val[dataKey])\n", "std_mean = calculate_std(val[dataKey])\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "\n", "val_mean.plot.errorbar(yerr=std_mean, fmt='--ob')\n", "\n", "plt.grid()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 129, "metadata": {}, "outputs": [ { "data": { "application/javascript": "/* Put everything inside the global mpl namespace */\n/* global mpl */\nwindow.mpl = {};\n\nmpl.get_websocket_type = function () {\n if (typeof WebSocket !== 'undefined') {\n return WebSocket;\n } else if (typeof MozWebSocket !== 'undefined') {\n return MozWebSocket;\n } else {\n alert(\n 'Your browser does not have WebSocket support. ' +\n 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n 'Firefox 4 and 5 are also supported but you ' +\n 'have to enable WebSockets in about:config.'\n );\n }\n};\n\nmpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n this.id = figure_id;\n\n this.ws = websocket;\n\n this.supports_binary = this.ws.binaryType !== undefined;\n\n if (!this.supports_binary) {\n var warnings = document.getElementById('mpl-warnings');\n if (warnings) {\n warnings.style.display = 'block';\n warnings.textContent =\n 'This browser does not support binary websocket messages. ' +\n 'Performance may be slow.';\n }\n }\n\n this.imageObj = new Image();\n\n this.context = undefined;\n this.message = undefined;\n this.canvas = undefined;\n this.rubberband_canvas = undefined;\n this.rubberband_context = undefined;\n this.format_dropdown = undefined;\n\n this.image_mode = 'full';\n\n this.root = document.createElement('div');\n this.root.setAttribute('style', 'display: inline-block');\n this._root_extra_style(this.root);\n\n parent_element.appendChild(this.root);\n\n this._init_header(this);\n this._init_canvas(this);\n this._init_toolbar(this);\n\n var fig = this;\n\n this.waiting = false;\n\n this.ws.onopen = function () {\n fig.send_message('supports_binary', { value: fig.supports_binary });\n fig.send_message('send_image_mode', {});\n if (fig.ratio !== 1) {\n fig.send_message('set_device_pixel_ratio', {\n device_pixel_ratio: fig.ratio,\n });\n }\n fig.send_message('refresh', {});\n };\n\n this.imageObj.onload = function () {\n if (fig.image_mode === 'full') {\n // Full images could contain transparency (where diff images\n // almost always do), so we need to clear the canvas so that\n // there is no ghosting.\n fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n }\n fig.context.drawImage(fig.imageObj, 0, 0);\n };\n\n this.imageObj.onunload = function () {\n fig.ws.close();\n };\n\n this.ws.onmessage = this._make_on_message_function(this);\n\n this.ondownload = ondownload;\n};\n\nmpl.figure.prototype._init_header = function () {\n var titlebar = document.createElement('div');\n titlebar.classList =\n 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n var titletext = document.createElement('div');\n titletext.classList = 'ui-dialog-title';\n titletext.setAttribute(\n 'style',\n 'width: 100%; text-align: center; padding: 3px;'\n );\n titlebar.appendChild(titletext);\n this.root.appendChild(titlebar);\n this.header = titletext;\n};\n\nmpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n\nmpl.figure.prototype._init_canvas = function () {\n var fig = this;\n\n var canvas_div = (this.canvas_div = document.createElement('div'));\n canvas_div.setAttribute(\n 'style',\n 'border: 1px solid #ddd;' +\n 'box-sizing: content-box;' +\n 'clear: both;' +\n 'min-height: 1px;' +\n 'min-width: 1px;' +\n 'outline: 0;' +\n 'overflow: hidden;' +\n 'position: relative;' +\n 'resize: both;'\n );\n\n function on_keyboard_event_closure(name) {\n return function (event) {\n return fig.key_event(event, name);\n };\n }\n\n canvas_div.addEventListener(\n 'keydown',\n on_keyboard_event_closure('key_press')\n );\n canvas_div.addEventListener(\n 'keyup',\n on_keyboard_event_closure('key_release')\n );\n\n this._canvas_extra_style(canvas_div);\n this.root.appendChild(canvas_div);\n\n var canvas = (this.canvas = document.createElement('canvas'));\n canvas.classList.add('mpl-canvas');\n canvas.setAttribute('style', 'box-sizing: content-box;');\n\n this.context = canvas.getContext('2d');\n\n var backingStore =\n this.context.backingStorePixelRatio ||\n this.context.webkitBackingStorePixelRatio ||\n this.context.mozBackingStorePixelRatio ||\n this.context.msBackingStorePixelRatio ||\n this.context.oBackingStorePixelRatio ||\n this.context.backingStorePixelRatio ||\n 1;\n\n this.ratio = (window.devicePixelRatio || 1) / backingStore;\n\n var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n 'canvas'\n ));\n rubberband_canvas.setAttribute(\n 'style',\n 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n );\n\n // Apply a ponyfill if ResizeObserver is not implemented by browser.\n if (this.ResizeObserver === undefined) {\n if (window.ResizeObserver !== undefined) {\n this.ResizeObserver = window.ResizeObserver;\n } else {\n var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n this.ResizeObserver = obs.ResizeObserver;\n }\n }\n\n this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n var nentries = entries.length;\n for (var i = 0; i < nentries; i++) {\n var entry = entries[i];\n var width, height;\n if (entry.contentBoxSize) {\n if (entry.contentBoxSize instanceof Array) {\n // Chrome 84 implements new version of spec.\n width = entry.contentBoxSize[0].inlineSize;\n height = entry.contentBoxSize[0].blockSize;\n } else {\n // Firefox implements old version of spec.\n width = entry.contentBoxSize.inlineSize;\n height = entry.contentBoxSize.blockSize;\n }\n } else {\n // Chrome <84 implements even older version of spec.\n width = entry.contentRect.width;\n height = entry.contentRect.height;\n }\n\n // Keep the size of the canvas and rubber band canvas in sync with\n // the canvas container.\n if (entry.devicePixelContentBoxSize) {\n // Chrome 84 implements new version of spec.\n canvas.setAttribute(\n 'width',\n entry.devicePixelContentBoxSize[0].inlineSize\n );\n canvas.setAttribute(\n 'height',\n entry.devicePixelContentBoxSize[0].blockSize\n );\n } else {\n canvas.setAttribute('width', width * fig.ratio);\n canvas.setAttribute('height', height * fig.ratio);\n }\n canvas.setAttribute(\n 'style',\n 'width: ' + width + 'px; height: ' + height + 'px;'\n );\n\n rubberband_canvas.setAttribute('width', width);\n rubberband_canvas.setAttribute('height', height);\n\n // And update the size in Python. We ignore the initial 0/0 size\n // that occurs as the element is placed into the DOM, which should\n // otherwise not happen due to the minimum size styling.\n if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n fig.request_resize(width, height);\n }\n }\n });\n this.resizeObserverInstance.observe(canvas_div);\n\n function on_mouse_event_closure(name) {\n return function (event) {\n return fig.mouse_event(event, name);\n };\n }\n\n rubberband_canvas.addEventListener(\n 'mousedown',\n on_mouse_event_closure('button_press')\n );\n rubberband_canvas.addEventListener(\n 'mouseup',\n on_mouse_event_closure('button_release')\n );\n rubberband_canvas.addEventListener(\n 'dblclick',\n on_mouse_event_closure('dblclick')\n );\n // Throttle sequential mouse events to 1 every 20ms.\n rubberband_canvas.addEventListener(\n 'mousemove',\n on_mouse_event_closure('motion_notify')\n );\n\n rubberband_canvas.addEventListener(\n 'mouseenter',\n on_mouse_event_closure('figure_enter')\n );\n rubberband_canvas.addEventListener(\n 'mouseleave',\n on_mouse_event_closure('figure_leave')\n );\n\n canvas_div.addEventListener('wheel', function (event) {\n if (event.deltaY < 0) {\n event.step = 1;\n } else {\n event.step = -1;\n }\n on_mouse_event_closure('scroll')(event);\n });\n\n canvas_div.appendChild(canvas);\n canvas_div.appendChild(rubberband_canvas);\n\n this.rubberband_context = rubberband_canvas.getContext('2d');\n this.rubberband_context.strokeStyle = '#000000';\n\n this._resize_canvas = function (width, height, forward) {\n if (forward) {\n canvas_div.style.width = width + 'px';\n canvas_div.style.height = height + 'px';\n }\n };\n\n // Disable right mouse context menu.\n this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n event.preventDefault();\n return false;\n });\n\n function set_focus() {\n canvas.focus();\n canvas_div.focus();\n }\n\n window.setTimeout(set_focus, 100);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'mpl-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'mpl-button-group';\n continue;\n }\n\n var button = (fig.buttons[name] = document.createElement('button'));\n button.classList = 'mpl-widget';\n button.setAttribute('role', 'button');\n button.setAttribute('aria-disabled', 'false');\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n\n var icon_img = document.createElement('img');\n icon_img.src = '_images/' + image + '.png';\n icon_img.srcset = '_images/' + image + '_large.png 2x';\n icon_img.alt = tooltip;\n button.appendChild(icon_img);\n\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n var fmt_picker = document.createElement('select');\n fmt_picker.classList = 'mpl-widget';\n toolbar.appendChild(fmt_picker);\n this.format_dropdown = fmt_picker;\n\n for (var ind in mpl.extensions) {\n var fmt = mpl.extensions[ind];\n var option = document.createElement('option');\n option.selected = fmt === mpl.default_extension;\n option.innerHTML = fmt;\n fmt_picker.appendChild(option);\n }\n\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n};\n\nmpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n // which will in turn request a refresh of the image.\n this.send_message('resize', { width: x_pixels, height: y_pixels });\n};\n\nmpl.figure.prototype.send_message = function (type, properties) {\n properties['type'] = type;\n properties['figure_id'] = this.id;\n this.ws.send(JSON.stringify(properties));\n};\n\nmpl.figure.prototype.send_draw_message = function () {\n if (!this.waiting) {\n this.waiting = true;\n this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n var format_dropdown = fig.format_dropdown;\n var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n fig.ondownload(fig, format);\n};\n\nmpl.figure.prototype.handle_resize = function (fig, msg) {\n var size = msg['size'];\n if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n fig._resize_canvas(size[0], size[1], msg['forward']);\n fig.send_message('refresh', {});\n }\n};\n\nmpl.figure.prototype.handle_rubberband = function (fig, msg) {\n var x0 = msg['x0'] / fig.ratio;\n var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n var x1 = msg['x1'] / fig.ratio;\n var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n x0 = Math.floor(x0) + 0.5;\n y0 = Math.floor(y0) + 0.5;\n x1 = Math.floor(x1) + 0.5;\n y1 = Math.floor(y1) + 0.5;\n var min_x = Math.min(x0, x1);\n var min_y = Math.min(y0, y1);\n var width = Math.abs(x1 - x0);\n var height = Math.abs(y1 - y0);\n\n fig.rubberband_context.clearRect(\n 0,\n 0,\n fig.canvas.width / fig.ratio,\n fig.canvas.height / fig.ratio\n );\n\n fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n};\n\nmpl.figure.prototype.handle_figure_label = function (fig, msg) {\n // Updates the figure title.\n fig.header.textContent = msg['label'];\n};\n\nmpl.figure.prototype.handle_cursor = function (fig, msg) {\n fig.rubberband_canvas.style.cursor = msg['cursor'];\n};\n\nmpl.figure.prototype.handle_message = function (fig, msg) {\n fig.message.textContent = msg['message'];\n};\n\nmpl.figure.prototype.handle_draw = function (fig, _msg) {\n // Request the server to send over a new figure.\n fig.send_draw_message();\n};\n\nmpl.figure.prototype.handle_image_mode = function (fig, msg) {\n fig.image_mode = msg['mode'];\n};\n\nmpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n for (var key in msg) {\n if (!(key in fig.buttons)) {\n continue;\n }\n fig.buttons[key].disabled = !msg[key];\n fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n }\n};\n\nmpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n if (msg['mode'] === 'PAN') {\n fig.buttons['Pan'].classList.add('active');\n fig.buttons['Zoom'].classList.remove('active');\n } else if (msg['mode'] === 'ZOOM') {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.add('active');\n } else {\n fig.buttons['Pan'].classList.remove('active');\n fig.buttons['Zoom'].classList.remove('active');\n }\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Called whenever the canvas gets updated.\n this.send_message('ack', {});\n};\n\n// A function to construct a web socket function for onmessage handling.\n// Called in the figure constructor.\nmpl.figure.prototype._make_on_message_function = function (fig) {\n return function socket_on_message(evt) {\n if (evt.data instanceof Blob) {\n var img = evt.data;\n if (img.type !== 'image/png') {\n /* FIXME: We get \"Resource interpreted as Image but\n * transferred with MIME type text/plain:\" errors on\n * Chrome. But how to set the MIME type? It doesn't seem\n * to be part of the websocket stream */\n img.type = 'image/png';\n }\n\n /* Free the memory for the previous frames */\n if (fig.imageObj.src) {\n (window.URL || window.webkitURL).revokeObjectURL(\n fig.imageObj.src\n );\n }\n\n fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n img\n );\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n } else if (\n typeof evt.data === 'string' &&\n evt.data.slice(0, 21) === 'data:image/png;base64'\n ) {\n fig.imageObj.src = evt.data;\n fig.updated_canvas_event();\n fig.waiting = false;\n return;\n }\n\n var msg = JSON.parse(evt.data);\n var msg_type = msg['type'];\n\n // Call the \"handle_{type}\" callback, which takes\n // the figure and JSON message as its only arguments.\n try {\n var callback = fig['handle_' + msg_type];\n } catch (e) {\n console.log(\n \"No handler for the '\" + msg_type + \"' message type: \",\n msg\n );\n return;\n }\n\n if (callback) {\n try {\n // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n callback(fig, msg);\n } catch (e) {\n console.log(\n \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n e,\n e.stack,\n msg\n );\n }\n }\n };\n};\n\n// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\nmpl.findpos = function (e) {\n //this section is from http://www.quirksmode.org/js/events_properties.html\n var targ;\n if (!e) {\n e = window.event;\n }\n if (e.target) {\n targ = e.target;\n } else if (e.srcElement) {\n targ = e.srcElement;\n }\n if (targ.nodeType === 3) {\n // defeat Safari bug\n targ = targ.parentNode;\n }\n\n // pageX,Y are the mouse positions relative to the document\n var boundingRect = targ.getBoundingClientRect();\n var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n\n return { x: x, y: y };\n};\n\n/*\n * return a copy of an object with only non-object keys\n * we need this to avoid circular references\n * https://stackoverflow.com/a/24161582/3208463\n */\nfunction simpleKeys(original) {\n return Object.keys(original).reduce(function (obj, key) {\n if (typeof original[key] !== 'object') {\n obj[key] = original[key];\n }\n return obj;\n }, {});\n}\n\nmpl.figure.prototype.mouse_event = function (event, name) {\n var canvas_pos = mpl.findpos(event);\n\n if (name === 'button_press') {\n this.canvas.focus();\n this.canvas_div.focus();\n }\n\n var x = canvas_pos.x * this.ratio;\n var y = canvas_pos.y * this.ratio;\n\n this.send_message(name, {\n x: x,\n y: y,\n button: event.button,\n step: event.step,\n guiEvent: simpleKeys(event),\n });\n\n /* This prevents the web browser from automatically changing to\n * the text insertion cursor when the button is pressed. We want\n * to control all of the cursor setting manually through the\n * 'cursor' event from matplotlib */\n event.preventDefault();\n return false;\n};\n\nmpl.figure.prototype._key_event_extra = function (_event, _name) {\n // Handle any extra behaviour associated with a key event\n};\n\nmpl.figure.prototype.key_event = function (event, name) {\n // Prevent repeat events\n if (name === 'key_press') {\n if (event.key === this._key) {\n return;\n } else {\n this._key = event.key;\n }\n }\n if (name === 'key_release') {\n this._key = null;\n }\n\n var value = '';\n if (event.ctrlKey && event.key !== 'Control') {\n value += 'ctrl+';\n }\n else if (event.altKey && event.key !== 'Alt') {\n value += 'alt+';\n }\n else if (event.shiftKey && event.key !== 'Shift') {\n value += 'shift+';\n }\n\n value += 'k' + event.key;\n\n this._key_event_extra(event, name);\n\n this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n return false;\n};\n\nmpl.figure.prototype.toolbar_button_onclick = function (name) {\n if (name === 'download') {\n this.handle_save(this, null);\n } else {\n this.send_message('toolbar_button', { name: name });\n }\n};\n\nmpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n this.message.textContent = tooltip;\n};\n\n///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n// prettier-ignore\nvar _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\nmpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n\nmpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n\nmpl.default_extension = \"png\";/* global mpl */\n\nvar comm_websocket_adapter = function (comm) {\n // Create a \"websocket\"-like object which calls the given IPython comm\n // object with the appropriate methods. Currently this is a non binary\n // socket, so there is still some room for performance tuning.\n var ws = {};\n\n ws.binaryType = comm.kernel.ws.binaryType;\n ws.readyState = comm.kernel.ws.readyState;\n function updateReadyState(_event) {\n if (comm.kernel.ws) {\n ws.readyState = comm.kernel.ws.readyState;\n } else {\n ws.readyState = 3; // Closed state.\n }\n }\n comm.kernel.ws.addEventListener('open', updateReadyState);\n comm.kernel.ws.addEventListener('close', updateReadyState);\n comm.kernel.ws.addEventListener('error', updateReadyState);\n\n ws.close = function () {\n comm.close();\n };\n ws.send = function (m) {\n //console.log('sending', m);\n comm.send(m);\n };\n // Register the callback with on_msg.\n comm.on_msg(function (msg) {\n //console.log('receiving', msg['content']['data'], msg);\n var data = msg['content']['data'];\n if (data['blob'] !== undefined) {\n data = {\n data: new Blob(msg['buffers'], { type: data['blob'] }),\n };\n }\n // Pass the mpl event to the overridden (by mpl) onmessage function.\n ws.onmessage(data);\n });\n return ws;\n};\n\nmpl.mpl_figure_comm = function (comm, msg) {\n // This is the function which gets called when the mpl process\n // starts-up an IPython Comm through the \"matplotlib\" channel.\n\n var id = msg.content.data.id;\n // Get hold of the div created by the display call when the Comm\n // socket was opened in Python.\n var element = document.getElementById(id);\n var ws_proxy = comm_websocket_adapter(comm);\n\n function ondownload(figure, _format) {\n window.open(figure.canvas.toDataURL());\n }\n\n var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n\n // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n // web socket which is closed, not our websocket->open comm proxy.\n ws_proxy.onopen();\n\n fig.parent_element = element;\n fig.cell_info = mpl.find_output_cell(\"
\");\n if (!fig.cell_info) {\n console.error('Failed to find cell for figure', id, fig);\n return;\n }\n fig.cell_info[0].output_area.element.on(\n 'cleared',\n { fig: fig },\n fig._remove_fig_handler\n );\n};\n\nmpl.figure.prototype.handle_close = function (fig, msg) {\n var width = fig.canvas.width / fig.ratio;\n fig.cell_info[0].output_area.element.off(\n 'cleared',\n fig._remove_fig_handler\n );\n fig.resizeObserverInstance.unobserve(fig.canvas_div);\n\n // Update the output cell to use the data from the current canvas.\n fig.push_to_output();\n var dataURL = fig.canvas.toDataURL();\n // Re-enable the keyboard manager in IPython - without this line, in FF,\n // the notebook keyboard shortcuts fail.\n IPython.keyboard_manager.enable();\n fig.parent_element.innerHTML =\n '';\n fig.close_ws(fig, msg);\n};\n\nmpl.figure.prototype.close_ws = function (fig, msg) {\n fig.send_message('closing', msg);\n // fig.ws.close()\n};\n\nmpl.figure.prototype.push_to_output = function (_remove_interactive) {\n // Turn the data on the canvas into data in the output cell.\n var width = this.canvas.width / this.ratio;\n var dataURL = this.canvas.toDataURL();\n this.cell_info[1]['text/html'] =\n '';\n};\n\nmpl.figure.prototype.updated_canvas_event = function () {\n // Tell IPython that the notebook contents must change.\n IPython.notebook.set_dirty(true);\n this.send_message('ack', {});\n var fig = this;\n // Wait a second, then push the new image to the DOM so\n // that it is saved nicely (might be nice to debounce this).\n setTimeout(function () {\n fig.push_to_output();\n }, 1000);\n};\n\nmpl.figure.prototype._init_toolbar = function () {\n var fig = this;\n\n var toolbar = document.createElement('div');\n toolbar.classList = 'btn-toolbar';\n this.root.appendChild(toolbar);\n\n function on_click_closure(name) {\n return function (_event) {\n return fig.toolbar_button_onclick(name);\n };\n }\n\n function on_mouseover_closure(tooltip) {\n return function (event) {\n if (!event.currentTarget.disabled) {\n return fig.toolbar_button_onmouseover(tooltip);\n }\n };\n }\n\n fig.buttons = {};\n var buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n var button;\n for (var toolbar_ind in mpl.toolbar_items) {\n var name = mpl.toolbar_items[toolbar_ind][0];\n var tooltip = mpl.toolbar_items[toolbar_ind][1];\n var image = mpl.toolbar_items[toolbar_ind][2];\n var method_name = mpl.toolbar_items[toolbar_ind][3];\n\n if (!name) {\n /* Instead of a spacer, we start a new button group. */\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n buttonGroup = document.createElement('div');\n buttonGroup.classList = 'btn-group';\n continue;\n }\n\n button = fig.buttons[name] = document.createElement('button');\n button.classList = 'btn btn-default';\n button.href = '#';\n button.title = name;\n button.innerHTML = '';\n button.addEventListener('click', on_click_closure(method_name));\n button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n buttonGroup.appendChild(button);\n }\n\n if (buttonGroup.hasChildNodes()) {\n toolbar.appendChild(buttonGroup);\n }\n\n // Add the status bar.\n var status_bar = document.createElement('span');\n status_bar.classList = 'mpl-message pull-right';\n toolbar.appendChild(status_bar);\n this.message = status_bar;\n\n // Add the close button to the window.\n var buttongrp = document.createElement('div');\n buttongrp.classList = 'btn-group inline pull-right';\n button = document.createElement('button');\n button.classList = 'btn btn-mini btn-primary';\n button.href = '#';\n button.title = 'Stop Interaction';\n button.innerHTML = '';\n button.addEventListener('click', function (_evt) {\n fig.handle_close(fig, {});\n });\n button.addEventListener(\n 'mouseover',\n on_mouseover_closure('Stop Interaction')\n );\n buttongrp.appendChild(button);\n var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n titlebar.insertBefore(buttongrp, titlebar.firstChild);\n};\n\nmpl.figure.prototype._remove_fig_handler = function (event) {\n var fig = event.data.fig;\n if (event.target !== this) {\n // Ignore bubbled events from children.\n return;\n }\n fig.close_ws(fig, {});\n};\n\nmpl.figure.prototype._root_extra_style = function (el) {\n el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n};\n\nmpl.figure.prototype._canvas_extra_style = function (el) {\n // this is important to make the div 'focusable\n el.setAttribute('tabindex', 0);\n // reach out to IPython and tell the keyboard manager to turn it's self\n // off when our div gets focus\n\n // location in version 3\n if (IPython.notebook.keyboard_manager) {\n IPython.notebook.keyboard_manager.register_events(el);\n } else {\n // location in version 2\n IPython.keyboard_manager.register_events(el);\n }\n};\n\nmpl.figure.prototype._key_event_extra = function (event, _name) {\n // Check for shift+enter\n if (event.shiftKey && event.which === 13) {\n this.canvas_div.blur();\n // select the cell after this one\n var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n IPython.notebook.select(index + 1);\n }\n};\n\nmpl.figure.prototype.handle_save = function (fig, _msg) {\n fig.ondownload(fig, null);\n};\n\nmpl.find_output_cell = function (html_output) {\n // Return the cell and output element which can be found *uniquely* in the notebook.\n // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n // IPython event is triggered only after the cells have been serialised, which for\n // our purposes (turning an active figure into a static one), is too late.\n var cells = IPython.notebook.get_cells();\n var ncells = cells.length;\n for (var i = 0; i < ncells; i++) {\n var cell = cells[i];\n if (cell.cell_type === 'code') {\n for (var j = 0; j < cell.output_area.outputs.length; j++) {\n var data = cell.output_area.outputs[j];\n if (data.data) {\n // IPython >= 3 moved mimebundle to data attribute of output\n data = data.data;\n }\n if (data['text/html'] === html_output) {\n return [cell, data, j];\n }\n }\n }\n }\n};\n\n// Register the function which deals with the matplotlib target/channel.\n// The kernel may be null if the page has been refreshed.\nif (IPython.notebook.kernel !== null) {\n IPython.notebook.kernel.comm_manager.register_target(\n 'matplotlib',\n mpl.mpl_figure_comm\n );\n}\n", "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "f = 224.9906 ± 0.4995 Hz\n" ] } ], "source": [ "def damp_osci(t, t0, A, B, nu, gamma):\n", " return A * np.exp(-gamma*t)*np.sin(2*np.pi*nu*(t-t0)) + B\n", "\n", "yvals = val_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "yvals_std = std_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "xvals = dataSet_cropOD[scanAxis[0]]#.sel(blink_on_time=slice(0.005, 0.025))\n", "\n", "fitted_qtys_1 = yvals.to_numpy()\n", "scan_para = xvals.to_numpy()\n", "fitted_qtys_err_1 = yvals_std.to_numpy()\n", "\n", "\n", "plt.figure()\n", "popt_x, pcov_x = curve_fit(damp_osci, scan_para, fitted_qtys_1, np.array([0, 3, 147, 3e2, 0.1]))\n", "freqdata = np.linspace(0.005, 19e-3, 500)\n", "plt.plot(freqdata, damp_osci(freqdata, *popt_x), 'g--',label='fit: t0=%5.3f, A=%5.3f, B=%5.3f, nu=%5.3f, Gamma=%5.3f' % tuple(popt_x))\n", "plt.errorbar(scan_para, fitted_qtys_1, yerr=fitted_qtys_err_1, fmt='or')\n", "plt.xlabel('hold time after switch on the trap (s)')\n", "plt.ylabel('Center along gravity direction (pixels)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "#plt.ylim([0,750])\n", "#plt.xlim([0.004, 0.025])\n", "#plt.legend(prop={'size': 14})\n", "plt.show()\n", "\n", "f_x = popt_x[3]\n", "df_x = pcov_x[3][3]**0.5\n", "\n", "print('f = %.4f \\u00B1 %.4f Hz'% tuple([np.abs(f_x),df_x]))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Truncation: 0.8" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "%matplotlib notebook\n", "shotNum = \"0036\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis = ['sweep_start_freq', 'sweep_stop_freq'])\n", " for i in [0]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_0\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (800, 900)\n", "imageAnalyser.span = (300, 300)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = None, fmt='ob')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "dataSet_cropOD_chunk = dataSet_cropOD.chunk((1, 1, 300, 300))\n", "fitAnalyser = FitAnalyser(\"Gaussian-2D\", fitDim=2)\n", "params = fitAnalyser.guess(dataSet_cropOD_chunk, dask=\"parallelized\")\n", "fitResult = fitAnalyser.fit(dataSet_cropOD_chunk, params, dask=\"parallelized\").load()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "val = fitAnalyser.get_fit_value(fitResult)\n", "std = fitAnalyser.get_fit_std(fitResult)\n", "\n", "fitCurve = fitAnalyser.eval(fitResult, x=np.arange(300), y=np.arange(300), dask=\"parallelized\").load()\n", "\n", "# dataKey = 'sigmax'\n", "# dataKey = 'centerx'\n", "# dataKey = 'sigmay'\n", "dataKey = 'centery'\n", "\n", "# val_mean = val[dataKey].mean(dim='runs')\n", "# std_mean = val[dataKey].std(dim='runs')\n", "\n", "val_mean = calculate_mean(val[dataKey])\n", "std_mean = calculate_std(val[dataKey])\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "\n", "val_mean.plot.errorbar(yerr=std_mean, fmt='--ob')\n", "\n", "plt.grid()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "def damp_osci(t, t0, A, B, nu, gamma):\n", " return A * np.exp(-gamma*t)*np.sin(2*np.pi*nu*(t-t0)) + B\n", "\n", "yvals = val_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "yvals_std = std_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "xvals = dataSet_cropOD[scanAxis[0]]#.sel(blink_on_time=slice(0.005, 0.025))\n", "\n", "fitted_qtys_1 = yvals.to_numpy()\n", "scan_para = xvals.to_numpy()\n", "fitted_qtys_err_1 = yvals_std.to_numpy()\n", "\n", "\n", "plt.figure()\n", "popt_x, pcov_x = curve_fit(damp_osci, scan_para, fitted_qtys_1, np.array([0, 3, 147, 2e2, 0.1]))\n", "freqdata = np.linspace(0.005, 19e-3, 500)\n", "plt.plot(freqdata, damp_osci(freqdata, *popt_x), 'g--',label='fit: t0=%5.3f, A=%5.3f, B=%5.3f, nu=%5.3f, Gamma=%5.3f' % tuple(popt_x))\n", "plt.errorbar(scan_para, fitted_qtys_1, yerr=fitted_qtys_err_1, fmt='or')\n", "plt.xlabel('hold time after switch on the trap (s)')\n", "plt.ylabel('Center along gravity direction (pixels)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "#plt.ylim([0,750])\n", "#plt.xlim([0.004, 0.025])\n", "#plt.legend(prop={'size': 14})\n", "plt.show()\n", "\n", "f_x = popt_x[3]\n", "df_x = pcov_x[3][3]**0.5\n", "\n", "print('f = %.4f \\u00B1 %.4f Hz'% tuple([np.abs(f_x),df_x]))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Truncation: 0.85" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "%matplotlib notebook\n", "shotNum = \"0038\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis = ['sweep_start_freq', 'sweep_stop_freq'])\n", " for i in [0]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_0\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (800, 900)\n", "imageAnalyser.span = (300, 300)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = None, fmt='ob')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "dataSet_cropOD_chunk = dataSet_cropOD.chunk((1, 1, 300, 300))\n", "fitAnalyser = FitAnalyser(\"Gaussian-2D\", fitDim=2)\n", "params = fitAnalyser.guess(dataSet_cropOD_chunk, dask=\"parallelized\")\n", "fitResult = fitAnalyser.fit(dataSet_cropOD_chunk, params, dask=\"parallelized\").load()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "val = fitAnalyser.get_fit_value(fitResult)\n", "std = fitAnalyser.get_fit_std(fitResult)\n", "\n", "fitCurve = fitAnalyser.eval(fitResult, x=np.arange(300), y=np.arange(300), dask=\"parallelized\").load()\n", "\n", "# dataKey = 'sigmax'\n", "# dataKey = 'centerx'\n", "# dataKey = 'sigmay'\n", "dataKey = 'centery'\n", "\n", "# val_mean = val[dataKey].mean(dim='runs')\n", "# std_mean = val[dataKey].std(dim='runs')\n", "\n", "val_mean = calculate_mean(val[dataKey])\n", "std_mean = calculate_std(val[dataKey])\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "\n", "val_mean.plot.errorbar(yerr=std_mean, fmt='--ob')\n", "\n", "plt.grid()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "def damp_osci(t, t0, A, B, nu, gamma):\n", " return A * np.exp(-gamma*t)*np.sin(2*np.pi*nu*(t-t0)) + B\n", "\n", "yvals = val_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "yvals_std = std_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "xvals = dataSet_cropOD[scanAxis[0]]#.sel(blink_on_time=slice(0.005, 0.025))\n", "\n", "fitted_qtys_1 = yvals.to_numpy()\n", "scan_para = xvals.to_numpy()\n", "fitted_qtys_err_1 = yvals_std.to_numpy()\n", "\n", "\n", "plt.figure()\n", "popt_x, pcov_x = curve_fit(damp_osci, scan_para, fitted_qtys_1, np.array([0, 3, 147, 2e2, 0.1]))\n", "freqdata = np.linspace(0.005, 19e-3, 500)\n", "plt.plot(freqdata, damp_osci(freqdata, *popt_x), 'g--',label='fit: t0=%5.3f, A=%5.3f, B=%5.3f, nu=%5.3f, Gamma=%5.3f' % tuple(popt_x))\n", "plt.errorbar(scan_para, fitted_qtys_1, yerr=fitted_qtys_err_1, fmt='or')\n", "plt.xlabel('hold time after switch on the trap (s)')\n", "plt.ylabel('Center along gravity direction (pixels)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "#plt.ylim([0,750])\n", "#plt.xlim([0.004, 0.025])\n", "#plt.legend(prop={'size': 14})\n", "plt.show()\n", "\n", "f_x = popt_x[3]\n", "df_x = pcov_x[3][3]**0.5\n", "\n", "print('f = %.4f \\u00B1 %.4f Hz'% tuple([np.abs(f_x),df_x]))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Truncation: 0.9" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "%matplotlib notebook\n", "shotNum = \"0040\"\n", "filePath = folderPath + \"/\" + shotNum + \"/*.h5\"\n", "\n", "dataSetDict = {\n", " dskey[groupList[i]]: read_hdf5_file(filePath, groupList[i], excludeAxis = ['sweep_start_freq', 'sweep_stop_freq'])\n", " for i in [0]\n", "}\n", "\n", "dataSet = dataSetDict[\"camera_0\"]\n", "\n", "print_scanAxis(dataSet)\n", "\n", "scanAxis = get_scanAxis(dataSet)\n", "\n", "dataSet = auto_rechunk(dataSet)\n", "\n", "dataSet = imageAnalyser.get_absorption_images(dataSet)\n", "\n", "imageAnalyser.center = (800, 900)\n", "imageAnalyser.span = (300, 300)\n", "imageAnalyser.fraction = (0.1, 0.1)\n", "\n", "dataSet_cropOD = imageAnalyser.crop_image(dataSet.OD)\n", "dataSet_cropOD = imageAnalyser.substract_offset(dataSet_cropOD).load()\n", "\n", "Ncount = imageAnalyser.get_Ncount(dataSet_cropOD)\n", "Ncount_mean = calculate_mean(Ncount)\n", "Ncount_std = calculate_std(Ncount)\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "Ncount_mean.plot.errorbar(ax=ax, yerr = None, fmt='ob')\n", "plt.ylabel('NCount')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "dataSet_cropOD_chunk = dataSet_cropOD.chunk((1, 1, 300, 300))\n", "fitAnalyser = FitAnalyser(\"Gaussian-2D\", fitDim=2)\n", "params = fitAnalyser.guess(dataSet_cropOD_chunk, dask=\"parallelized\")\n", "fitResult = fitAnalyser.fit(dataSet_cropOD_chunk, params, dask=\"parallelized\").load()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "val = fitAnalyser.get_fit_value(fitResult)\n", "std = fitAnalyser.get_fit_std(fitResult)\n", "\n", "fitCurve = fitAnalyser.eval(fitResult, x=np.arange(300), y=np.arange(300), dask=\"parallelized\").load()\n", "\n", "# dataKey = 'sigmax'\n", "# dataKey = 'centerx'\n", "# dataKey = 'sigmay'\n", "dataKey = 'centery'\n", "\n", "# val_mean = val[dataKey].mean(dim='runs')\n", "# std_mean = val[dataKey].std(dim='runs')\n", "\n", "val_mean = calculate_mean(val[dataKey])\n", "std_mean = calculate_std(val[dataKey])\n", "\n", "fig = plt.figure()\n", "ax = fig.gca()\n", "\n", "val_mean.plot.errorbar(yerr=std_mean, fmt='--ob')\n", "\n", "plt.grid()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "def damp_osci(t, t0, A, B, nu, gamma):\n", " return A * np.exp(-gamma*t)*np.sin(2*np.pi*nu*(t-t0)) + B\n", "\n", "yvals = val_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "yvals_std = std_mean#.sel(blink_on_time=slice(0.005, 0.025))\n", "xvals = dataSet_cropOD[scanAxis[0]]#.sel(blink_on_time=slice(0.005, 0.025))\n", "\n", "fitted_qtys_1 = yvals.to_numpy()\n", "scan_para = xvals.to_numpy()\n", "fitted_qtys_err_1 = yvals_std.to_numpy()\n", "\n", "\n", "plt.figure()\n", "popt_x, pcov_x = curve_fit(damp_osci, scan_para, fitted_qtys_1, np.array([0, 3, 147, 2e2, 0.1]))\n", "freqdata = np.linspace(0.005, 19e-3, 500)\n", "plt.plot(freqdata, damp_osci(freqdata, *popt_x), 'g--',label='fit: t0=%5.3f, A=%5.3f, B=%5.3f, nu=%5.3f, Gamma=%5.3f' % tuple(popt_x))\n", "plt.errorbar(scan_para, fitted_qtys_1, yerr=fitted_qtys_err_1, fmt='or')\n", "plt.xlabel('hold time after switch on the trap (s)')\n", "plt.ylabel('Center along gravity direction (pixels)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "#plt.ylim([0,750])\n", "#plt.xlim([0.004, 0.025])\n", "#plt.legend(prop={'size': 14})\n", "plt.show()\n", "\n", "f_x = popt_x[3]\n", "df_x = pcov_x[3][3]**0.5\n", "\n", "print('f = %.4f \\u00B1 %.4f Hz'% tuple([np.abs(f_x),df_x]))" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 13, "metadata": {}, "outputs": [ { "data": { "image/png": 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ACyG8AQAAWAjhDQAAwEIIbwAAABbi96/HAgA0bBUV0tat0oEDUlSUlJDg7xkB1kZ4AwDUmYICKTNT2rfv57bo6GDdd1+U0tL8Ny/AyrhsCgCoEwUF0uDBrsFNkvbvl5588jqtWmX4Z2KAxRHeAAA+V1HhOONmmu7bTNMR2h59NEgVFfU8MaABILwBAHxu61b3M26uDO3bZ2jr1vqaEdBwEN4AAD534IBv+wH4GeENAOBzUVG+7QfgZ4Q3AIDPJSZKMTGSUe0zCaZiYkwlJtbnrICGgfAGAPC5oCBp7lzHr88PcIbheIrh6acrFBRUzxMDGgDCGwCgTqSnSytWSNHRru3R0dLjj2/XHXdU8SgqgItikV4AQJ1JT5cGDjz/GxbOaP36A5Ku8ff0AEsivAEA6lRQkJSU9PNru91vUwEaBC6bAgAAWAjhDQAAwEIIbwAAABZCeAMAALAQwhsAAICFEN4AAAAshPAGAABgIYQ3AAAACyG8AQAAWAjhDQAAwEIIbwAAABZCeAMAALAQwhsAAICFEN4AAAAshPAGAABgIYQ3AAAACyG8AQAAWAjhDQAAwEIIbwAAABZCeAMAALAQwhsAAICFBNfmTbt379batWv1wQcfqLi4WKdOnVJkZKTi4+PVp08fJScnKyQkxNdzBQAAaPRqdOZty5YtSk1N1RVXXKE//vGP2rp1q3766SeFhIRo9+7dev755zVgwADFxMRoypQpKi0trat5AwAANEoeh7c77rhDKSkpatq0qV599VV9//332rt3r3bs2KEPPvhAn3/+uY4fP64dO3booYce0rJly3TFFVdo48aNdTl/AACARsXjy6atWrXSF198ocsuu6zaPkFBQbrmmmt0zTXXKCcnRy+//LKKi4t9MlEAAADUILwtXbq0RgM3adJEDz74YI0nBAAAgOr5/WnTTZs2adiwYeratatatGih6OhoDRw4UDt27HDra7fb9cwzz6h79+5q1qyZWrdurd/+9rf68MMP3frOmzdPXbt2lc1mU+fOnZWbmyu73V4fuwQAAFBnahXegoKC1L17d+3bt89t28cff6ygoCCPx1qwYIH27NmjzMxMrV27VnPnztUPP/yghIQEbdq0ydmvoqJCd9xxh6ZNm6bf/e53WrdunZYvX67U1FSdOHHCZcyZM2cqMzNT6enpWr9+vUaPHq28vDyNGTOmNrsLAAAQMGq1VIhpmtq7d68SEhK0bt06de/evdYTmD9/vtq1a+fSlpqaqssvv1x5eXnq06ePJMeZtHXr1umDDz5QQkKCs2///v1d3ltSUqIZM2Zo5MiRysvLkyQlJSXJbrcrKytL48aNU3x8fK3nCwBVqaiQtm6VDhyQoqKkxESpBv+OBQCP1fqy6bJlyxQdHa3ExES9++67tZ7A+cFNklq2bKn4+Hjt3bvX2TZ37lzddNNNLsGtKoWFhSorK9PQoUNd2ocOHSrTNLV69epazxUAqlJQIMXFSTffLN17r+O/cXGOdgDwtVqdeZMcoWvLli26++67lZaWphdffFH333+/TyZ1/PhxffLJJ86zbnv37tWePXt02223adKkSXrppZdUUlKiK6+8Uv/5n//p8mDErl27JMntbGBUVJQiIyOd26tSXl6u8vJy5+vKdersdrtX98tVvpd77rxDHb1HDb13fg1XrTJ0zz1BMk1JMpz9iotNDR4svfZahe64w/TDTAMXx6FvUEfvBVoNPZ1HrcObJDVr1kxvvvmmHnroIQ0ZMkR79+7VLbfc4s2QkqQxY8boxIkTmjx5siQ5lxtZsmSJYmJi9Nxzz+mSSy7RCy+8oCFDhuj06dMaOXKkJMdlU5vNphYtWriNGx4erpKSkmo/d9asWcrNzXVr37Bhg5o3b+71fhUVFXk9BqijL1BD7xUVFamiQho9OkWmGaRzg5skmaYhydSYMacVHFzEJdQqcBz6BnX0XqDU8OTJkx718yq8SY4lQV544QVFR0crKytLhYWFXo2XnZ2t5cuXa968eerZs6ck6ezZs5KksrIyrV27Vp06dZIkJScn69prr9W0adOc4U2SDMNwH9iDbRMnTtT48eOdr0tLSxUbG6uUlBSFhYXVep/sdruKior42jAvUUfvUUPvnVvDDz9sqpKSC/01aujw4eYKC+uv3r05+1aJ49A3qKP3Aq2Gnn4zldfhrVJOTo5iY2P18MMP13qM3NxczZgxQzNnztTYsWOd7REREZKkrl27OoOb5Ahit956q2bNmqUffvhB7dq1U0REhMrKynTy5Em3s2VHjhxxBsKq2Gw22Ww2t/aQkBCf/Kb6apzGjjp6jxp6LyQkRIcOefZX6KFDwaLc7jgOfYM6ei9QaujpHGr9xfRRUVFu7cOHD9fVV1+tL7/8ssZj5ubmKicnRzk5OZo0aZLLti5dulR72dJ03GiiJk0cz15U3uu2c+dO/eY3v3H2O3jwoA4fPqxu3brVeG4AUJUq/hr0qh8AeKJWT5t26tRJTZs2rXJbQkJCjb9ZYfr06crJyVFWVpamTp3qtj04OFgDBw7U559/rj179jjbTdNUYWGhunTposjISEmOZUZCQ0OVn5/vMkZ+fr4Mw9CgQYNqNDcAqE5iohQTI1V3N4ZhSLGxjn4A4Csen3l77733ajTwTTfd5FG/p59+WlOmTFFqaqr69++vbdu2uWyvXBpk+vTpWrdunVJTU5WTk6OwsDC9+OKL+t///V+98cYbzv7h4eHKyspSdna2wsPDlZKSou3btysnJ0cjRoxgjTcAPhMUJM2dKw0e7Ahq5jm3tVUGujlzWO8NgG95HN6SkpIueLN/JdM0ZRiGKioqPBp3zZo1khzrs1X1sEPlZdEuXbpo69atmjBhgkaNGiW73a5f/epXeuuttzRgwACX90yePFmtWrXS/PnzNXv2bLVv314TJkxwPr0KAL6Sni6tWCFlZkrnfulMTIwjuKWn+21qABooj8PbX//6V5fXFRUVuueee/Tkk0/qsssuq/UEtmzZ4nHfbt266e233/aob0ZGhjIyMmo5KwDwXHq6NHAg37AAoH54HN7uvPNOl9eVZ9ZuueUW/frXv/btrADAYoKCpKQkf88CQGNQ66/HAgAAQP0jvAEAAFgI4Q0AAMBCCG8AAAAW4vEDC+c/uVm5JMhTTz2ltm3bumwzDENz5871zQwBAADg5HF4e+6556psf/31193aCG8AAAB1w+Pwdvbs2bqcBwAAADzAPW8AAAAWQngDAACwEI/DW7du3bRq1SqPBz5w4IAyMjL0xBNP1GpiAAAAcOdxeLv77rv1wAMPqGPHjpo4caLWr1+vQ4cOOb84/tSpU9q1a5defPFF3XbbberUqZN27Nih22+/vc4mDwAA0Nh4/MDClClTNHLkSM2ZM0cvvviinnzySRmGIcMwFBISotOnT0tyLCGSmJio1157Tenp6XU2cQAAgMbI4/AmSVFRUXryySc1Y8YMffzxx/roo4+0f/9+nTp1SpGRkeratauSkpIUExNTV/MFAABo1GoU3iqFhIToxhtv1I033ujr+QAAAOACeNoUAADAQghvAAAAFkJ4AwAAsBDCGwAAgIUQ3gAAACyE8AYAAGAhHoe3Xr166bPPPnNp27Rpk06cOOHzSQEAAKBqHoe3//f//p9++ukn5+uKigolJyfryy+/rJOJAQAAwJ1Xl00rv9cUAAAA9YN73gAAACyE8AYAAGAhNfpu01dffVXvv/++JOns2bMyDEPLly/Xli1bXPoZhqFHHnnEZ5MEAACAQ43C29y5c93a/uu//sutjfAGAABQNzwOb7t3767LeQAAAMADHoe3f//73/r1r3+tli1b1uV8AAAAcAEeP7Bw8803uy3SCwAAgPrlcXhjTTcAAAD/Y6kQAAAAC6lReDMMo67mAQAAAA/UaKmQm2++WU2aXDzvGYah48eP13pSAAAAqFqNwltSUpLatm1bV3MBAADARdQovE2ZMkW9evWqq7kAAADgInhgAQAAwEIIbwAAABZCeAMAALAQj+95O3v2bF3OAwAAAB7gzBsAAICFEN4A+ERpqWQYjp9166SKCn/PCAAaJsIbAK8VFEjx8T+/TkuT4uIc7QAA3yK8AfBKQYE0eLBUXOzaXlzsaCfAAYBvEd4A1FpFhZSZKZmm+7bKtnHjuIQKAL7k8dOm3333XY0G7tixY40nA8Batm6V9u2rfrtpSnv3OvolJdXbtACgQfM4vMXFxckwDI8HruCf2kCDd+CAb/sBAC7O4/C2aNGiGoU3T23atEnLli3Thx9+qL1796p169a69tprNWXKFPXs2bPK95imqd69e2vr1q0aM2aMnnvuObc+8+bN0/z587V792516NBBQ4YM0aRJkxQSEuLzfQAaq6go3/YDAFycx+FtyJAhdTKBBQsWqKSkRJmZmYqPj9ehQ4f09NNPKyEhQevXr1efPn3c3jN//nx9/fXX1Y45c+ZMZWdna8KECUpJSdH27duVlZWl4uJiLVy4sE72A2iMEhOlmBjHwwlV3fdmGI7tiYn1PzcAaKg8Dm91Zf78+WrXrp1LW2pqqi6//HLl5eW5hbc9e/Zo4sSJWrp0qdLT093GKykp0YwZMzRy5Ejl5eVJkpKSkmS325WVlaVx48Yp/tw1DQDUWlCQNHeu46lSw3ANcJUn6ufMcfQDAPhGrcNbRUWF1q1bp88//1ynTp1y2WYYhrKzsz0a5/zgJkktW7ZUfHy89u7d67Zt1KhRSk5O1h133FHleIWFhSorK9PQoUNd2ocOHarJkydr9erVhDfAh9LTpRUrpIwM1+VCYmIcwa2Kf2MBALxQq/BWUlKixMREffHFFzIMQ+b//XP73HviPA1vVTl+/Lg++eQTt7NuL774ov7+97/rs88+q/a9u3btkiR1797dpT0qKkqRkZHO7VUpLy9XeXm583VpaakkyW63y26313g/KlW+15sxQB19oa5qeNttUu/eUmSk457SNWvOqG9fU0FBUkP77eI49B419A3q6L1Aq6Gn86hVeJs8ebJCQ0P173//W506ddLHH3+s8PBwPf/883r77be1cePG2gzrNGbMGJ04cUKTJ092thUXF+uxxx7Tn//8Z3Xo0KHa95aUlMhms6lFixZu28LDw1VSUlLte2fNmqXc3Fy39g0bNqh58+Y13At3RUVFXo8B6ugLdVXD1asd/62okNavr5OPCBgch96jhr5BHb0XKDU8efKkR/1qFd7effddTZ061RmimjRpoi5duuipp55SWVmZHnvsMb366qu1GVrZ2dlavny55s2b5/K06R/+8Af98pe/1MiRIy86xoWeir3QtokTJ2r8+PHO16WlpYqNjVVKSorCwsI83AN3drtdRUVFSk5O5mlXL1BH71FD71FD71FD36CO3gu0GlZe8buYWoW3ffv2KS4uTkFBQWrSpIlOnDjh3Hbbbbfp3nvvrc2wys3N1YwZMzRz5kyNHTvW2b5ixQoVFhbq/fff1/Hjx13ec/r0aR07dkwtWrRQSEiIIiIiVFZWppMnT7qdLTty5Ei1y49Iks1mk81mc2sPCQnxyW+qr8Zp7Kij96ih96ih96ihb1BH7wVKDT2dQ62+HisyMtIZojp06OByH9mRI0d05syZGo+Zm5urnJwc5eTkaNKkSS7bdu3apTNnzighIUFt2rRx/kjSCy+8oDZt2uidd96R9PO9bjt37nQZ4+DBgzp8+LC6detW47kBAAAEilqdeevZs6f++c9/qn///kpLS9O0adMUFhampk2batKkSUpISKjReNOnT1dOTo6ysrI0depUt+1DhgxRUhXfrXPzzTdr0KBByszMdIay1NRUhYaGKj8/X7/5zW+cffPz82UYhgYNGlSjuQEAAASSWoW3sWPH6ptvvpHkCF7btm3TAw88IEnq0qWL5s6d6/FYTz/9tKZMmaLU1FT1799f27Ztc9mekJCguLg4xcXFVfn+6Ohol2AXHh6urKwsZWdnKzw83LlIb05OjkaMGMEyIQAAwNJqFd769u2rvn37SpLatm2rTz/9VLt27ZJhGOratauCgz0fds2aNZIc67MVFha6bTerWrb9IiZPnqxWrVpp/vz5mj17ttq3b68JEya4PL0KAABgRT75hgXDMNzWVfPUli1bav25Fwp2GRkZysjIqPXYAAAAgahWDywsXrxYOTk5VW7LycnR0qVLvZkTAAAAqlGr8Pbss886n/Y8X2RkpJ599lmvJgUAAICq1Sq8ff3119UuuREfH6+vvvrKq0kBAACgarUKb5LcFss9t70267wBAADg4moV3rp3767XXnutym2vvvpqrR9eAAAAwIXVKryNHTtWK1as0IMPPqiPP/5YxcXF+vjjjzVkyBCtXLlSf/zjH309TwAAAKiWS4Xce++9+uKLLzRr1iwtW7bM2d6kSRNlZWXp97//vc8mCKD2SkulSy5x/HrtWunmm/07HwCA92q9ztu0adM0bNgwFRUV6dChQ2rbtq1SUlLUqVMnX84PQC0VFEjnLnWYliZFRwfrvvuilJbmv3kBALzj1SK9cXFxGjlypK/mAsBHCgqkwYOl89ex3r9fevLJ6/TrX1fo7rv9MzcAgHdq/bQpgMBUUSFlZroHN0kyTUOS9OijQaqoqOeJAQB8wuPwFhQUpL///e+ONzVpoqCgoGp/avLdpgB8a+tWad++C/UwtG+foa1b62tGAABf8jhlTZkyRTExMc5fG4ZRZ5MCUHsHDvi2HwAgsHgc3qZOner8dXXfawrA/6KifNsPABBYanXP27Rp07R///4qtx04cEDTpk3zalIAai8xUYqJkao/OW4qJsZUYmJ9zgoA4Cu1Cm+5ubnaV81NNfv371dubq5XkwJQe0FB0ty5jl+fH+AMw/EUw9NPVygoqJ4nBgDwiVqFN7Oqx9j+z08//aSQkJBaTwiA99LTpRUrpOho1/boaOnxx7frjjuq/zMMAAhsHt/z9o9//EP/8z//43y9du1affHFFy59Tp06peXLl6tLly4+myCA2klPlwYOdDx9euCA4x63hIQzWr/+gKRr/D09AEAteRzeVq1a5bwcahhGtfe1NWvWTIsXL/bN7AB4JShISkr6+bXd7repAAB8xOPwNmrUKA0YMECmaapXr15avHixunXr5tLHZrOpS5cuatasmc8nCgAAgBqEt6ioKEVFRen06dNat26doqOj3cIbAAAA6laNH1gIDg7Wbbfdpu+//74u5gM0ChUV0pYt0quvOv7LV1UBADxV4++xatKkiWJiYlRaWloX8wEavIICx3ePnrvaTkyMY3mP9HT/zQsAYA21Wipk+PDhmj9/vio4XQDUSEGBNHiw+3ePFhc72gsK/DMvAIB11Oob5Js2baovv/xSV111lW6//XZFRUW5fNepYRh65JFHfDZJoCGoqHCccatqmUTTdCyoO26cY3kPFtAFAFSnVuHt8ccfd/76mWeecdtOeAPcbd3qfsbtXKYp7d3r6Hfu8h4AAJyrVuFt9+7dvp4H0OAdOODbfgCAxqlW4a1Tp06+ngfQ4EVF+bYfAKBxqlV4q/TFF1/ob3/7mw4fPqzhw4erffv22r9/v9q0acNCvcB5EhMdT5UWF1d935thOLYnJtb/3AAA1lGrp00rKio0fPhwXX311Xr44Yc1ZcoU7d+/X5L00EMPadasWT6dJNAQBAU5lgORHEHtXJWv58zhYQUAwIXVKrzNnDlTr7zyip566int2rVL5jmnEfr166fCwkKfTRBoSNLTpRUrpOho1/aYGEc767wBAC6mVpdN8/PzlZ2drfHjx7ut9da5c2ceaAAuID3dsRzI1q2OhxOiohyXSjnjBgDwRK3CW3Fxsa6//voqt4WGhurHH3/0alJAQxcUxHIgAIDaqdVl03bt2unbb7+tctuXX36pmJgYryYFAACAqtUqvKWlpWnmzJkqLi52thmGoePHj+vZZ5/Vbbfd5rMJAgAA4Ge1Cm/Tpk3TmTNnFB8frzvvvFOGYWjSpEnq1q2bysrKlJ2d7et5AgAAQDUIb4cOHXL++tJLL9X27dv1u9/9Tjt27FBQUJD+93//V/369dOHH36o8PDwOpksAABAY+fxAwvR0dG6/fbbNXz4cKWmpurSSy/V888/X5dzAwAAwHk8PvN21113ad26dRowYIBiY2OVlZVV7UMLAAAAqBseh7fly5frwIEDmj9/vqKjo5WXl6crrrhCSUlJWrZsmcrKyupyngAAAFANH1gICwvTH/7wB3388cf65z//qUceeURffvmlHnjgAbVv314PP/ywtm/fXldzBQAAaPRq9bSpJF111VWaPXu29u3bp9WrVyspKUmLFi1SQkKCevTo4cs5AgAA4P/UOrxVCgoK0u23366//OUvGjt2rCTpn//8p9cTAwAAgLtafT1WpYqKCr311ltavHixCgsLdebMGfXo0UPDhw/31fwAAABwjlqFt3/+859atGiRli1bpsOHDyssLEwjRozQ8OHD1bNnT1/PEQAAAP/H4/BWWlqqV155RYsWLdKOHTskSTfddJOGDx+uwYMHKzQ0tM4mCQAAAAePw1v79u1VXl6uqKgoTZgwQcOGDVOXLl3qcm4AAAA4j8fhLTU1VcOHD1e/fv3UpInXzzkAAACgFjwObwUFBXU5DwAAAHjA76fQNm3apGHDhqlr165q0aKFoqOjNXDgQOd9dZLjqdZnnnlGqampiomJUfPmzXXVVVdpwoQJOnbsWJXjzps3T127dpXNZlPnzp2Vm5sru91eT3sFAABQN/we3hYsWKA9e/YoMzNTa9eu1dy5c/XDDz8oISFBmzZtkiSdOnVKOTk56tSpk+bMmaO1a9dq5MiRWrhwoW644QadOnXKZcyZM2cqMzNT6enpWr9+vUaPHq28vDyNGTPGH7sIC6mokLZskV591fHfigp/zwgAAFderfPmC/Pnz1e7du1c2lJTU3X55ZcrLy9Pffr0UbNmzbR7925FREQ4+yQlJaljx4666667tHLlSt13332SpJKSEs2YMUMjR45UXl6es6/dbldWVpbGjRun+Pj4+ttBWEZBgZSZKe3b93NbTIw0d66Unu6/eQEAcC6/n3k7P7hJUsuWLRUfH6+9e/dKcnyLw7nBrVKvXr0kydlPkgoLC1VWVqahQ4e69B06dKhM09Tq1at9OHs0FAUF0uDBrsFNkoqLHe3c8gkACBR+P/NWlePHj+uTTz5Rnz59Ltiv8rLq1Vdf7WzbtWuXJKl79+4ufaOiohQZGencXpXy8nKVl5c7X5eWlkqS7Ha7V/fLVb6Xe+68U1d1rKiQMjKCZZqSZLhsM03JMExlZkppaWcUFOTTj653HIveo4beo4a+QR29F2g19HQehmk6/pcVSO677z69/vrr2rZtW7Xf2FBcXKyePXsqNjZWH3/8sXP5klGjRmnp0qUqKytze8+VV16puLg4rV+/vsoxc3JylJub69b+yiuvqHnz5l7sEQLZzp0Rys6+8aL9pk9/X927l9TDjAAAjdHJkyd177336vjx4woLC6u2X8CdecvOztby5cs1b968aoPbkSNHlJaWJtM09frrr7utO2cYRpXvu9i2iRMnavz48c7XpaWlio2NVUpKygWLeDF2u11FRUVKTk5WSEhIrcdp7OqqjqWl1R8T5+rUKUFpaQH3b50a4Vj0HjX0HjX0DerovUCrYeUVv4sJqPCWm5urGTNmaObMmRo7dmyVfY4ePark5GQVFxdr06ZNuuyyy1y2R0REqKysTCdPnnQ7W3bkyJELfveqzWaTzWZzaw8JCfHJb6qvxmnsfF3H2FhP+wWrofz2cSx6jxp6jxr6BnX0XqDU0NM5+P2BhUq5ubnKyclRTk6OJk2aVGWfo0ePqm/fvtq9e7eKiorUo0cPtz6V97rt3LnTpf3gwYM6fPiwunXr5vvJw9ISEx1PlVZ3UtYwHAEvMbF+5wUAQFUCIrxNnz5dOTk5ysrK0tSpU6vsUxncvv32W23YsEHXXHNNlf1SU1MVGhqq/Px8l/b8/HwZhqFBgwb5ePawuqAgx3IgknuAq3w9Z44s/7ACAKBh8Ptl06efflpTpkxRamqq+vfvr23btrlsT0hI0KlTp3Trrbfq008/1Zw5c3TmzBmXfm3btlWXLl0kSeHh4crKylJ2drbCw8OVkpKi7du3KycnRyNGjGCNN1QpPV1asaLqdd7mzGGdNwBA4PB7eFuzZo0kx/pshYWFbttN09T333+v7du3S5IyMzPd+jz44IMuZ9omT56sVq1aaf78+Zo9e7bat2+vCRMmaPLkyXWzE2gQ0tOlgQOlrVulAwekqCjHpVLOuAEAAonfw9uWLVsu2icuLk41XdEkIyNDGRkZtZwVGqugICkpyd+zAACgegFxzxsAAAA8Q3gDAACwEMIbAACAhRDeAAAALITwBgAAYCGENwAAAAshvAEAAFgI4Q0AAMBCCG8AAAAWQngDAACwEMIbAACAhRDeAAAALITwBgAAYCHB/p4AUFMVFdIHH0gHDkhRUVJiohQU5O9ZAQBQPwhvsJSPPorSmDHBKi7+uS0mRpo7V0pP99+8AACoL1w2hWWsWmXoySevcwluklRcLA0eLBUU+GdeAADUJ8IbLKGiQho/vvLaqOGyzTQd/x03ztEPAICGjPAGS9i6VSouNnR+cKtkmtLevY5+AAA0ZIQ3WMKBA77tBwCAVRHeYAlRUb7tBwCAVRHeYAmJiVJ0tCnJrHK7YUixsY5+AAA0ZIQ3WEJQkPTMM46nEQzDNcAZ/3cb3Jw5rPcGAGj4CG+wjDvuMPX449vVoYNre0yMtGIF67wBABoHFumFpVx//QHl5JzRtm0hfMMCAKBRIrzBcoKCpKQkf88CAAD/4LIpAACAhRDeAAAALITwBgAAYCGENwAAAAshvAEAAFgI4Q0AAMBCCG8AAAAWQngDAACwEMIbAACAhRDeAAAALITwBgAAYCGENwAAAAshvAEAAFgI4Q0AAMBCCG8AAAAWQngDAACwEMIbAACAhRDeAAAALITwBgAAYCGENwAAAAshvAEAAFgI4Q0AAMBCCG8AAAAW4vfwtmnTJg0bNkxdu3ZVixYtFB0drYEDB2rHjh1ufT/55BP17dtXLVu2VOvWrZWenq5vv/22ynHnzZunrl27ymazqXPnzsrNzZXdbq/r3QEAAKhTfg9vCxYs0J49e5SZmam1a9dq7ty5+uGHH5SQkKBNmzY5+33xxRdKSkrS6dOn9cYbb2jRokX617/+pcTERB06dMhlzJkzZyozM1Pp6elav369Ro8erby8PI0ZM6a+dw8AAMCngv09gfnz56tdu3Yubampqbr88suVl5enPn36SJKmTJkim82mt99+W2FhYZKknj176oorrtDs2bP15JNPSpJKSko0Y8YMjRw5Unl5eZKkpKQk2e12ZWVlady4cYqPj6/HPbSOigpp61bpwAEpKkpKTJSCgvw9KwAAcC6/n3k7P7hJUsuWLRUfH6+9e/dKks6cOaO3335bd955pzO4SVKnTp108803a9WqVc62wsJClZWVaejQoS5jDh06VKZpavXq1XWzIxZXUCDFxUk33yzde6/jv3FxjnYAABA4/H7mrSrHjx/XJ5984jzr9s033+jUqVPq0aOHW98ePXqoqKhIZWVlCg0N1a5duyRJ3bt3d+kXFRWlyMhI5/aqlJeXq7y83Pm6tLRUkmS32726X67yvYF6z92qVYbuuSdIpilJhrO9uNjU4MHSa69V6I47TL/Nr1Kg19EKqKH3qKH3qKFvUEfvBVoNPZ1HQIa3MWPG6MSJE5o8ebIkx6VQSQoPD3frGx4eLtM0dfToUUVFRamkpEQ2m00tWrSosm/lWFWZNWuWcnNz3do3bNig5s2b13Z3nIqKirwew9cqKqTRo1NkmkE6N7hJkmkakkyNGXNawcFFAXMJNRDraDXU0HvU0HvU0Deoo/cCpYYnT570qF/Ahbfs7GwtX75c8+bNU8+ePV22GYZRzbtct3na73wTJ07U+PHjna9LS0sVGxurlJQUl8u1NWW321VUVKTk5GSFhITUepy68Le/GSopudBhYOjw4eYKC+uv3r39e/YtkOtoFdTQe9TQe9TQN6ij9wKthpVX/C4moMJbbm6uZsyYoZkzZ2rs2LHO9oiICEmq8qzZkSNHZBiGWrdu7exbVlamkydPup0tO3LkiFsgPJfNZpPNZnNrDwkJ8clvqq/G8aXzHtS9QL9gBcrUA7GOVkMNvUcNvUcNfYM6ei9QaujpHPz+wEKl3Nxc5eTkKCcnR5MmTXLZ1qVLFzVr1kw7d+50e9/OnTt1+eWXKzQ0VNLP97qd3/fgwYM6fPiwunXrVkd7YE1RUb7tBwAA6lZAhLfp06crJydHWVlZmjp1qtv24OBg3XbbbSooKNCPP/7obP/uu++0efNmpaenO9tSU1MVGhqq/Px8lzHy8/NlGIYGDRpUV7thSYmJUkyMVN3VZMOQYmMd/QAAgP/5/bLp008/rSlTpig1NVX9+/fXtm3bXLYnJCRIcpyZu+666zRgwABNmDBBZWVlmjJliiIjI/Xoo486+4eHhysrK0vZ2dkKDw9XSkqKtm/frpycHI0YMYI13s4TFCTNnSsNHuwIauY5t7VVBro5c1jvDQCAQOH38LZmzRpJjvXZCgsL3bab/5cmunbtqi1btujxxx/X4MGDFRwcrD59+mj27Nlq27aty3smT56sVq1aaf78+Zo9e7bat2+vCRMmOJ9ehav0dGnFCikzU9q37+f2mBhHcDvnxCYAAPAzv4e3LVu2eNy3Z8+e2rhxo0d9MzIylJGRUctZNT7p6dLAgXzDAgAAgc7v4Q2BIyhISkry9ywAAMCFBMQDCwAAAPAM4Q0AAMBCCG8AAAAWQngDAACwEMIbAACAhRDeAAAALITwBgAAYCGENwAAAAshvAEAAFgI4Q0AAMBCCG8AAAAWQngDAACwEMIbAACAhRDeAAAALITwBgAAYCGENwAAAAshvAEAAFgI4Q0AAMBCCG8AAAAWQngDAACwEMIbAACAhRDeAAAALITwBgAAYCGENwAAAAshvAEAAFgI4Q0AAMBCCG8AAAAWQngDAACwEMIbAACAhRDeAAAALITwBgAAYCHB/p5AY1ZRIW3dKh04IEVFSYmJUlCQv2cFAAACGeHNTwoKpMxMad++n9tiYqS5c6X0dP/NCwAABDYum/pBQYE0eLBrcJOk4mJHe0GBf+YFAAACH+GtnlVUOM64mab7tsq2ceMc/QAAAM5HeKtnW7e6n3E7l2lKe/c6+gEAAJyP8FbPDhzwbT8AANC4EN7qWVSUb/sBAIDGhfBWzxITHU+VGkbV2w1Dio119AMAADgf4a2eBQU5lgOR3ANc5es5c1jvDQAAVI3w5gfp6dKKFVJ0tGt7TIyjnXXeAABAdVik10/S06WBA/mGBQAAUDOENz8KCpKSkvw9CwAAYCVcNgUAALAQwhsAAICFEN4AAAAshPAGAABgIX4Pbz/++KP+8z//UykpKWrbtq0Mw1BOTo5bP9M09cILL6hnz54KCwtTRESEevfurXfeeafKcefNm6euXbvKZrOpc+fOys3Nld1ur+O9AQAAqFt+D28lJSVauHChysvLNWjQoGr7TZ06VaNGjVKvXr20cuVK5efny2azacCAASooKHDpO3PmTGVmZio9PV3r16/X6NGjlZeXpzFjxtTx3gAAANQtvy8V0qlTJx09elSGYejw4cN68cUXq+y3aNEi3XjjjVqwYIGzLTk5We3bt9eSJUuU/n8r25aUlGjGjBkaOXKk8vLyJElJSUmy2+3KysrSuHHjFB8fX/c7BgAAUAf8fubNMAwZ1X3R5zlCQkJ0ySWXuLSFhoY6fyoVFhaqrKxMQ4cOdek7dOhQmaap1atX+2TeAAAA/uD3M2+eyszM1GOPPaaXXnpJ6enpKisr01NPPaXjx48rIyPD2W/Xrl2SpO7du7u8PyoqSpGRkc7tVSkvL1d5ebnzdWlpqSTJbrd7db9c5Xu558471NF71NB71NB71NA3qKP3Aq2Gns7DMuFt3LhxatasmcaMGaMRI0ZIksLDw7VmzRrdcMMNzn4lJSWy2Wxq0aKF2xjh4eEqKSmp9jNmzZql3Nxct/YNGzaoefPmXu9DUVGR12OAOvoCNfQeNfQeNfQN6ui9QKnhyZMnPepnmfC2ePFiZWZmauzYserXr59Onz6tpUuXauDAgSooKNCtt97q7Huhy7AX2jZx4kSNHz/e+bq0tFSxsbFKSUlRWFhYredut9tVVFSk5ORkhYSE1Hqcxo46eo8aeo8aeo8a+gZ19F6g1bDyit/FWCK8HT161HnGbfbs2c72fv36KSkpSX/4wx+0e/duSVJERITKysp08uRJt7NlR44cUc+ePav9HJvNJpvN5tYeEhLik99UX43T2FFH71FD71FD71FD36CO3guUGno6B78/sOCJL7/8UqdOndJ1113ntu3aa6/Vnj179NNPP0n6+V63nTt3uvQ7ePCgDh8+rG7dutX9hAEAAOqIJcJbhw4dJEnbtm1zaTdNU9u2bVObNm2c97ilpqYqNDRU+fn5Ln3z8/NlGMYF15IDAAAIdAFx2XTdunU6ceKEfvzxR0nSZ599phUrVkiS0tLS1LFjR6Wnp2vhwoWy2WxKS0tTeXm5lixZog8++EDTp0933ssWHh6urKwsZWdnKzw8XCkpKdq+fbtycnI0YsSIGq3xZpqmJM+vQVfHbrfr5MmTKi0tDYjTslZFHb1HDb1HDb1HDX2DOnov0GpYmTcq80e1zADQqVMnU1KVP7t37zZN0zRPnTplPvXUU2aPHj3MVq1ameHh4WZCQoK5bNky8+zZs25jzp071/zFL35hNm3a1OzYsaM5depU8/Tp0zWa1969e6udFz/88MMPP/zww09d/Ozdu/eC+cQwzYvFu8br7Nmz2r9/v1q1auXRQsLVqXxqde/evV49tdrYUUfvUUPvUUPvUUPfoI7eC7QamqapH3/8UR06dFCTJtXf2RYQl00DVZMmTRQTE+Oz8cLCwgLi4LA66ug9aug9aug9augb1NF7gVTD879NqiqWeGABAAAADoQ3AAAACyG81QObzaapU6dWuQAwPEcdvUcNvUcNvUcNfYM6es+qNeSBBQAAAAvhzBsAAICFEN4AAAAshPAGAABgIYQ3D/30008aN26cOnTooNDQUP3qV7/Sa6+9dtH3FRQU6He/+50uv/xyNWvWTHFxcfr973+vr776qsr+Gzdu1PXXX6/mzZsrMjJSQ4YM0Q8//ODr3fGL+qhhUlKSDMNw+0lNTa2LXap3ta3hxo0blZycrA4dOshms6ldu3bq06eP1q5dW23/hnocSvVTR45Fz2RlZckwDHXr1q3K7Q35WKyPGjb041CqfR0rv/O8qp+DBw+69Q+oY7FG3xfViCUnJ5utW7c2n3/+eXPTpk3miBEjTEnm8uXLL/i+Xr16mbfffru5aNEic8uWLebLL79sXnXVVWbLli3NXbt2ufTdsmWLGRwcbA4cONDcsGGDuWzZMjM6Otrs1q2bWVZWVpe7Vy/qo4a9e/c2L7vsMvOjjz5y+fn888/rctfqTW1r+Nprr5mZmZnma6+9Zm7ZssUsKCgwU1JSTEnmyy+/7NK3oR+Hplk/deRYvLhPP/3UtNls5qWXXmpeffXVbtsb+rFYHzVs6Mehada+josXLzYlmYsXL3arz/lfpxloxyLhzQPvvPOOKcl85ZVXXNqTk5PNDh06mGfOnKn2vd9//71bW3FxsRkSEmIOHz7cpf26664z4+PjTbvd7mz74IMPTEnmf//3f3u5F/5VXzXs3bt3lX+BNQTe1LAqp0+fNqOjo83ExESX9oZ8HJpm/dWRY/HC7Ha7+atf/crMyMiotlYN+Visrxo25OPQNL2rY2V42759+0U/J9CORS6bemDVqlVq2bKl7rrrLpf2oUOHav/+/fr444+rfW+7du3c2jp06KCYmBjt3bvX2VZcXKzt27fr/vvvV3Dwz99a9tvf/la/+MUvtGrVKh/sif/URw0bOm9qWJWQkBC1bt3a5Xhr6MehVD91bOh8UcMnnnhCR44c0cyZM6vc3tCPxfqoYWPg6z/PVQnEY5Hw5oFdu3bpqquucvvLuUePHs7tNfHtt9/q3//+t66++mqXzzh3zPM/p6afEWjqo4aVvvnmG4WHhys4OFhdunTR5MmTderUqdpPPkD4ooZnz57VmTNntH//fk2dOlX/+te/9Oijj7p8xrljnv85Vj8OpfqpYyWOxap99tlnmjFjhhYsWKCWLVtW+xnnjnn+51j9WKyPGlZqqMeh5Js/zwMGDFBQUJDCw8OVnp7u9p5APBYbzz8VvVBSUqLLLrvMrT08PNy53VNnzpzR8OHD1bJlSz3yyCMun3HumOd/Tk0+IxDVRw0l6cYbb9R//Md/qGvXrjp16pTWrVunP//5z3r//fe1efNmNWli3X+v+KKGaWlpWr9+vSTHFzG//vrr6t+/v8tnnDvm+Z9j9eNQqp86ShyL1Tl79qyGDRum9PR0paWlXfAzzh3z/M+x+rFYHzWUGvZxKHlXx/bt22vy5MlKSEhQWFiYdu7cqSeeeEIJCQn64IMP9Mtf/tJljEA6FglvHjIMo1bbzmWapoYPH66tW7dq5cqVio2N9XgsTz8jkNVHDWfMmOHyOi0tTXFxcXrsscf05ptv6o477qj5xAOItzWcN2+ejh07pgMHDmjZsmX6j//4Dy1ZskS/+93vPBqrIRyHUv3UkWOxas8884y++uorvfXWW159TkM4Fuujhg39OJRqX8fU1FSXp25vuukm9e/fX927d9eUKVP05ptvejSWP45Fa0fuehIREVFlsj5y5IikqtP4+UzT1IgRI7Rs2TLl5+dr4MCBbp8hVf2vhCNHjnj0GYGsPmpYnfvuu0+StG3bthrMOPD4ooZXXHGFrrvuOt1+++164403dMstt2jMmDE6e/as8zOkhnscSvVTx+o09mPxu+++05QpUzR16lQ1bdpUx44d07Fjx3TmzBmdPXtWx44dc17Oa+jHYn3UsDoN5TiUfPPn+VxxcXG68cYbXWoTiMci4c0D3bt31+eff64zZ864tO/cuVOSql2fqFJl6Fi8eLFefPFF5x+cc1WOUTnm+Z9zsc8IdPVRw4ux+uUBb2tYlV69euno0aM6dOiQyxgN9TiU6qeOF9NYj8Vvv/1Wp06dUmZmptq0aeP8+eCDD/T555+rTZs2mjhxossYDfVYrI8aXozVj0Opbv48m6bpUpuAPBbr/flWC1q7dq0pyXzttddc2lNTUy/6KPLZs2fN4cOHm4ZhmAsXLrzg5/Tq1cvs1q2by3gfffSRKclcsGCBdzvhZ/VVw6o8+eSTpiRz9erVNX5vIPGmhlU5e/as2bt3b7N169Yuj7835OPQNOuvjlVp7Mfi0aNHzc2bN7v9/PKXvzTj4uLMzZs3m1999ZWzf0M+FuurhlVpKMehafr+z/O3335rtmzZ0hw0aJBLe6Adi4Q3DyUnJ5tt2rQxFy5caG7atMkcOXKkKclctmyZs8+wYcPMoKAgc8+ePc62sWPHmpLMYcOGuS0C+Mknn7h8xubNm83g4GDzjjvuMIuKiszly5ebsbGxDWpByrqs4XvvvWfeeuut5vPPP29u2LDBfOutt8yHH37YDAoKMvv06WNWVFTU6/7WhdrW8Pbbbzezs7PNlStXmlu2bDFfeeUV5+Ky8+fPd/mMhn4cmmbd15Fj0aGqGlalurXIGvqxWNc1bAzHoWnWvo633HKLmZuba65atcp89913zTlz5pgdOnQwW7VqZe7cudPlMwLtWCS8eejHH380MzIyzPbt25tNmzY1e/ToYb766qsufR588EFTkrl7925nW6dOnUxJVf506tTJ7XM2bNhgJiQkmKGhoWZ4eLj5wAMPVLlIrRXVdQ2/+uorMy0tzYyOjjZtNpsZGhpqdu/e3Zw5c2aD+IveNGtfwyeffNK87rrrzDZt2phBQUFmRESEeeutt5pvv/12lZ/TkI9D06z7OnIsOlRVw6pcaCHZhnws1nUNG8NxaJq1r+O4cePM+Ph4s1WrVmZwcLDZoUMH87777jO//PLLKj8nkI5FwzRNs24uyAIAAMDXrH+3IgAAQCNCeAMAALAQwhsAAICFEN4AAAAshPAGAABgIYQ3AAAACyG8AQAAWAjhDQAAwEIIbwDqVH5+vgzDcP4EBwcrJiZGQ4cOVXFxsb+nV6+ysrLUsWNHBQcHq3Xr1h69Z/z48TIMQwMGDKjbydXA0qVLdc899+jKK69UkyZNFBcX5+8pAY1KsL8nAKBxWLx4sbp27apTp07pvffe06xZs/S3v/1NO3fuVIsWLfw9vTr35ptvaubMmZo8ebL69esnm8120ffY7XYtW7ZMklRYWKji4mJFR0fX9VQv6uWXX9bBgwfVq1cvnT17Vna73d9TAhoVwhuAetGtWzdde+21kqSbb75ZFRUVmj59ulavXq3f//73fp5d9UzTVFlZmZo1a+bVOLt27ZIkZWRkqF27dh69580339ShQ4fUv39/vfPOO1qyZIkmTZp00ffZ7XbnWc66sH79ejVp4rhwM2DAAOe+AagfXDYF4BcJCQmSpH//+9+SpLKyMk2cOFGdO3dW06ZNFR0drTFjxujYsWPO9/zpT3/SJZdcooqKCmfbH//4RxmGoaeeesrZVlJSoiZNmmjevHnOttLSUj322GMu448bN04nTpxwmZdhGBo7dqyef/55XXXVVbLZbFqyZEm1+3H27Fn9+c9/VteuXWWz2dSuXTs98MAD2rdvn7NPXFycsrKyJEmXXnqpDMNQTk7ORWv00ksvqWnTplq8eLFiY2O1ePFinf911Fu2bJFhGHr55Zf16KOPKjo6WjabTV9//bWGDBmili1b6osvvtCtt96qFi1aKCoqSk888YQkadu2bbrxxhvVokUL/eIXv7jgfp6rMrgB8A/+BALwi6+//lqS1LZtW5mmqUGDBmn27Nm6//779c4772j8+PFasmSJ+vTpo/LycklS3759VVpaqr///e/OcTZu3KhmzZqpqKjI2fbuu+/KNE317dtXknTy5En17t1bS5YsUUZGhtatW6fHH39c+fn5uv32290C0erVq7VgwQJNmTJF69evV2JiYrX78fDDD+vxxx9XcnKy3nrrLU2fPl2FhYX67W9/q8OHD0uSVq1apeHDh0tyXP786KOPNGLEiAvWZ9++fdqwYYMGDhyotm3b6sEHH9TXX3+t9957r8r+EydO1Hfffafnn39ea9ascZ7ds9vtSk9PV//+/fXmm2+qX79+mjhxoiZNmqQHH3xQw4YN06pVq3TllVdqyJAh2rFjxwXnBSAAmABQhxYvXmxKMrdt22ba7Xbzxx9/NN9++22zbdu2ZqtWrcyDBw+ahYWFpiTzz3/+s8t7X3/9dVOSuXDhQtM0TfPEiRNm06ZNzWnTppmmaZr79u0zJZmPP/642axZM7OsrMw0TdMcOXKk2aFDB+c4s2bNMps0aWJu377dZfwVK1aYksy1a9c62ySZl1xyiXnkyJGL7tvnn39uSjJHjx7t0v7xxx+bksxJkyY526ZOnWpKMg8dOuRJ2cxp06aZkszCwkLTNE3z22+/NQ3DMO+//36Xfps3bzYlmTfddJPbGA8++KApyVy5cqWzzW63m23btjUlmZ988omzvaSkxAwKCjLHjx/v0fwq9e/f3+zUqVON3gPAO5x5A1AvEhISFBISolatWmnAgAFq37691q1bp0svvVSbNm2SJA0ZMsTlPXfddZdatGihd999V5LUvHlzXX/99dq4caMkqaioSK1bt9af/vQnnT59Wu+//74kx9m4yrNukvT222+rW7du+tWvfqUzZ844f2699VYZhqEtW7a4fG6fPn3Upk2bi+7T5s2bq5x3r169dNVVVznnXVOmaTovlSYnJ0uSOnfurKSkJK1cuVKlpaVu77nzzjurHMswDKWlpTlfBwcH6/LLL1dUVJSuueYaZ3t4eLjatWvnvIwNIHAR3gDUi6VLl2r79u369NNPtX//fv3jH//QDTfcIMlxj1pwcLDatm3r8h7DMNS+fXuVlJQ42/r27att27bpxIkT2rhxo/r06aOIiAj17NlTGzdu1O7du7V7926X8Pb999/rH//4h0JCQlx+WrVqJdM0nZc3K0VFRXm0T5Xzqqp/hw4dXOZdE5s2bdLu3bt11113qbS0VMeOHdOxY8d099136+TJk3r11Vfd3lPdnJs3b67Q0FCXtqZNmyo8PNytb9OmTVVWVlarOQOoPzxtCqBeXHXVVc6nTc8XERGhM2fO6NChQy4BzjRNHTx4UNddd52z7ZZbblF2drbee+89vfvuu5o6daqzfcOGDercubPzdaXIyEg1a9ZMixYtqvLzIyMjXV4bhuHRPkVEREiSDhw4oJiYGJdt+/fvdxvXUy+99JIk6ZlnntEzzzxT5faHHnrIpc3TOQOwPs68AfC7yqBVuaZZpZUrV+rEiRMuQaxXr14KCwvTnDlzdPDgQedlxb59++rTTz/VG2+8ofj4eHXo0MH5ngEDBuibb75RRESErr32Wref2i4y26dPnyrnvX37dn3++ecu8/bU0aNHtWrVKt1www3avHmz28/vf/97bd++neU5gEaMM28A/C45OVm33nqrHn/8cZWWluqGG27QP/7xD02dOlXXXHON7r//fmffoKAg9e7dW2vWrFHnzp3VpUsXSdINN9wgm82md999VxkZGS7jjxs3TitXrtRNN92kRx55RD169NDZs2f13XffacOGDXr00Uf1m9/8psbzvvLKKzVq1CjNmzdPTZo0Ub9+/bRnzx5lZ2crNjZWjzzySI3HXL58ucrKypSRkaGkpCS37REREVq+fLleeukl/dd//VeNx/eFzz77TJ999pkk6eDBgzp58qRWrFghSYqPj1d8fLxf5gU0Fpx5A+B3hmFo9erVGj9+vBYvXqy0tDTnsiGbNm1y+zaCyvvZzr2vzWaz6cYbb3Rrl6QWLVpo69atGjJkiBYuXKj+/fvr7rvv1rPPPquYmBivvt5pwYIFeuKJJ7R27VoNGDBAkydPVkpKij788EPnZdWaeOmll9SuXTsNGjSoyu3du3dXQkKCli1bptOnT9d63t544403dNddd+muu+7Sjh07dOjQIefrN954wy9zAhoTwzTPW+AIAAAAAYszbwAAABZCeAMAALAQwhsAAICFEN4AAAAshPAGAABgIYQ3AAAACyG8AQAAWAjhDQAAwEIIbwAAABZCeAMAALAQwhsAAICF/H9VNfHfWP5qLAAAAABJRU5ErkJggg==", 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", 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" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "tf_z = [299.3777, 288.1736, 272.4744, 259.5129, 241.8841, 233.8030, 229.2665, 219.5115, 211.4388, 199.3276, 184.9726]\n", "dtf_z = [3.7588, 3.5503,1.2193, 0.7946, 1.7848, 1.4811, 0.7289, 1.0038, 0.7646, 1.0321, 1.0431]\n", "trunc = [0.5, 0.55, 0.6, 0.65, 0.7, 0.725, 0.75, 0.775, 0.8, 0.85, 0.9]\n", "p_1 = [0.507, 0.449, 0.398, 0.354, 0.315, 0.298, 0.282, 0.266, 0.252, 0.226, 0.204]\n", "p_2 = [3.88, 3.38, 2.911, 2.474, 2.066, 1.873, 1.687, 1.507, 1.33, 1.003, 0.696]\n", " \n", "plt.figure()\n", "plt.errorbar(p_1, tf_z, yerr = dtf_z, fmt = 'ob')\n", "plt.xlabel('Power of Arm 1')\n", "plt.ylabel('Vertical TF (Hz)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "\n", "tf_y = [49.3970, 47.4535, 43.9127, 40.8258, 36.6638, 35.6111, 34.3650, 32.0196, 29.9294, 26.5413, 22.4257]\n", "dtf_y = [1.5574, 0.5536, 0.3721, 0.4734, 0.9428, 0.7725, 0.3264, 0.2862, 0.1988, 0.2477, 0.3690]\n", "trunc = [0.5, 0.55, 0.6, 0.65, 0.7, 0.725, 0.75, 0.775, 0.8, 0.85, 0.9]\n", " \n", "plt.figure()\n", "plt.errorbar(p_2, tf_y, yerr = dtf_y, fmt = 'oy')\n", "plt.xlabel('Power of Arm 2')\n", "plt.ylabel('Axial TF (Hz)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "\n", "tf_x = [303.5930, 286.0152, 272.6675, 253.6669, 238.8665, 232.4375, 224.9906, 218.7975, 210.9468, 196.7401, 180.0950]\n", "dtf_x = [6.9704, 2.5433, 0.6739, 0.5183, 0.3901, 0.3994, 0.4995, 0.3777, 0.3864, 0.3636, 0.4790]\n", "trunc = [0.5, 0.55, 0.6, 0.65, 0.7, 0.725, 0.75, 0.775, 0.8, 0.85, 0.9]\n", " \n", "plt.figure()\n", "plt.errorbar(p_1, tf_x, yerr = dtf_x, fmt = 'og')\n", "plt.xlabel('Power of Arm 1')\n", "plt.ylabel('Horz TF (Hz)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)" ] }, { "cell_type": "code", "execution_count": 17, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "v_x = 27451.697 Hz\n" ] } ], "source": [ "import numpy as np\n", "from astropy import units as u, constants as ac\n", "\n", "DY_POLARIZABILITY = 184.4 # in a.u, most precise measured value of Dy polarizability\n", "DY_MASS = 164*u.u\n", "\n", "def horz_tf(x, w_x, w_z):\n", " w_x = w_x*u.um\n", " w_z = w_z*u.um\n", " x = x * u.W\n", " alpha = DY_POLARIZABILITY\n", " m = DY_MASS\n", " TrapDepth = 2*x/(np.pi*w_x*w_z) * (1 / (2 * ac.eps0 * ac.c)) * alpha * (4 * np.pi * ac.eps0 * ac.a0**3)\n", " ret = ((1/(2 * np.pi)) * np.sqrt(4 * TrapDepth / (m*w_x**2))).decompose()\n", " return ret.value\n", " \n", "def vert_tf(x, w_x, w_z):\n", " w_x = w_x*u.um\n", " w_z = w_z*u.um\n", " x = x * u.W\n", " alpha = DY_POLARIZABILITY\n", " m = DY_MASS\n", " TrapDepth = 2*x/(np.pi*w_x*w_z) * (1 / (2 * ac.eps0 * ac.c)) * alpha * (4 * np.pi * ac.eps0 * ac.a0**3)\n", " ret = ((1/(2 * np.pi)) * np.sqrt(4 * TrapDepth / (m*w_z**2))).decompose()\n", " return ret.value\n", "\n", "\n", "v = horz_tf(30, 30, 0.2)\n", "print('v_x = %.3f Hz' %(v))" ] }, { "cell_type": "code", "execution_count": 42, "metadata": {}, "outputs": [ { "data": { "text/html": [ "

Model

Model(horz_tf)

Fit Statistics

fitting methodleastsq
# function evals26
# data points9
# variables2
chi-square 79.9011718
reduced chi-square 11.4144531
Akaike info crit. 23.6520935
Bayesian info crit. 24.0465426

Variables

name value standard error relative error initial value min max vary
w_x 24.1519450 292150.064 (1209633.69%) 25 0.00000000 100.000000 True
w_z 52.4613985 1903772.36 (3628901.28%) 35 0.00000000 100.000000 True

Correlations (unreported correlations are < 0.100)

w_xw_z-1.0000
" ], "text/plain": [ "" ] }, "execution_count": 42, "metadata": {}, "output_type": "execute_result" }, { "data": { "image/png": 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", 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" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "from lmfit import Model\n", "\n", "fitModel = Model(horz_tf, independent_vars=['x'], param_names=['w_x', 'w_z'], nan_policy='raise')\n", "params = fitModel.make_params()\n", "params['w_x'].set(value=25, min=0, max=100)\n", "params['w_z'].set(value=35, min=0, max=100)\n", "fitResult = fitModel.fit(data=np.array(tf_z[:-2]), params=params, x=np.array(p_1[:-2]))\n", "\n", "plt.figure()\n", "plt.errorbar(p_1, tf_x, yerr = dtf_x, fmt = 'og')\n", "plt.errorbar(p_1[:-2], fitResult.best_fit, fmt = 'k--')\n", "plt.xlabel('Power of Arm 1')\n", "plt.ylabel('Horz TF (Hz)')\n", "plt.tight_layout()\n", "plt.grid(visible=1)\n", "\n", "fitResult" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 68, "metadata": { "scrolled": true }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "[0.005, 0.0057, 0.0064, 0.0071, 0.0078, 0.0085, 0.0092, 0.0099, 0.0106, 0.0113, 0.012, 0.0127, 0.0134, 0.0141, 0.0148, 0.0155, 0.0162, 0.0169, 0.0176, 0.0183, 0.019, 0.0197]\n", "22\n" ] }, { "data": { "text/plain": [ "0.01235" ] }, "execution_count": 68, "metadata": {}, "output_type": "execute_result" } ], "source": [ "l = list(np.arange(0.005, 0.02, 7e-4))\n", "# l = np.logspace(np.log10(250e-6), np.log10(500e-3), num=15)\n", "\n", "l = [round(item, 7) for item in l]\n", "#random.shuffle(l)\n", "\n", "print(l)\n", "print(len(l))\n", "np.mean(l)" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "pixel = 5.86e-6\n", "M = 0.6827\n", "F = (1/(0.3725*8.4743e-14)) * (pixel / M)**2\n", "NCount = 85000\n", "AtomNumber = NCount * F / 1e8\n", "print(AtomNumber)" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "muB = 9.274e-24\n", "hbar = 6.626e-34 / (2 * np.pi)\n", "gJ = 1.24\n", "\n", "f = ufloat(10108.46982, 0.26282) \n", "Delta = 2 * np.pi * f * 1e3\n", "\n", "Bz = (Delta*hbar) / (muB*gJ)\n", "print(Bz * 1e4)" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "muB = 9.274e-24\n", "hbar = 6.626e-34 / (2 * np.pi)\n", "gJ = 1.24\n", "Bz = 5.8854 * 1e-4\n", "(Bz*muB*gJ/hbar) / (2 * np.pi * 1e6)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## ODT 1 Calibration" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "v_high = 2.7\n", "\"\"\"High Power\"\"\"\n", "P_arm1_high = 5.776 * v_high - 0.683\n", "\n", "v_mid = 0.2076\n", "\"\"\"Intermediate Power\"\"\"\n", "P_arm1_mid = 5.815 * v_mid - 0.03651\n", "\n", "v_low = 0.062\n", "\"\"\"Low Power\"\"\"\n", "P_arm1_low = 5271 * v_low - 27.5\n", "\n", "print(round(P_arm1_high, 3))\n", "print(round(P_arm1_mid, 3))\n", "print(round(P_arm1_low, 3))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## ODT 2 Power Calibration" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "v = 0.842\n", "P_arm2 = 2.302 * v - 0.06452\n", "print(round(P_arm2, 3))" ] } ], "metadata": { "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.9.12" }, "vscode": { "interpreter": { "hash": "c05913ad4f24fdc6b2418069394dc5835b1981849b107c9ba6df693aafd66650" } } }, "nbformat": 4, "nbformat_minor": 2 }