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Jianshun Gao 2023-09-08 14:20:25 +02:00
parent d84e6da902
commit aa13f41dd9
2 changed files with 250 additions and 60 deletions
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11
Analyser/ImagingAnalyser.py
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@ -168,6 +168,8 @@ class ImageAnalyser():
if span is None: if span is None:
span = self._span span = self._span
if not x in
x_start = int(center[0] - span[0] / 2) x_start = int(center[0] - span[0] / 2)
x_end = int(center[0] + span[0] / 2) x_end = int(center[0] + span[0] / 2)
y_end = int(center[1] + span[1] / 2) y_end = int(center[1] + span[1] / 2)
@ -193,7 +195,14 @@ class ImageAnalyser():
dataSet[key].attrs['x_span'] = span[0] dataSet[key].attrs['x_span'] = span[0]
dataSet[key].attrs['y_span'] = span[1] dataSet[key].attrs['y_span'] = span[1]
return dataSet.isel(x=slice(x_start, x_end), y=slice(y_start, y_end)) res = dataSet.isel(x=slice(x_start, x_end), y=slice(y_start, y_end))
res = res.assign_coords(
{
'x': np.linspace(x_start, x_end - 1, span[0]),
'y': np.linspace(y_start, y_end - 1, span[1]),
}
)
return res
def get_OD(self, imageAtom, imageBackground, imageDrak): def get_OD(self, imageAtom, imageBackground, imageDrak):
"""Calculate the OD image for absorption imaging. """Calculate the OD image for absorption imaging.

299
AtomLoss.ipynb
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