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finish reading from hdf5
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{
"cells": [
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{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"# Import supporting package"
]
},
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{
"cell_type": "code",
add tool function
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"execution_count": 1,
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"metadata": {},
"outputs": [],
"source": [
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"import xarray as xr\n",
"import numpy as np\n",
"\n",
"import matplotlib.pyplot as plt\n",
"\n",
"from DataContainer.ReadData import read_hdf5_file\n",
"from Analyser.ImagingAnalyser import ImageAnalyser\n",
"from Analyser.FitAnalyser import FitAnalyser\n",
"\n",
"imageAnalyser = ImageAnalyser()"
]
},
{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"## Start a client for parallel computing"
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]
},
{
"cell_type": "code",
add tool function
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"execution_count": 2,
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"metadata": {},
add tool function
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"outputs": [
{
"data": {
"text/html": [
"<div>\n",
" <div style=\"width: 24px; height: 24px; background-color: #e1e1e1; border: 3px solid #9D9D9D; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <h3 style=\"margin-bottom: 0px;\">Client</h3>\n",
" <p style=\"color: #9D9D9D; margin-bottom: 0px;\">Client-1a44c769-ea9b-11ed-88cc-80e82ce2fa8e</p>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
"\n",
" <tr>\n",
" \n",
" <td style=\"text-align: left;\"><strong>Connection method:</strong> Cluster object</td>\n",
" <td style=\"text-align: left;\"><strong>Cluster type:</strong> distributed.LocalCluster</td>\n",
" \n",
" </tr>\n",
"\n",
" \n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:8787/status\" target=\"_blank\">http://127.0.0.1:8787/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\"></td>\n",
" </tr>\n",
" \n",
"\n",
" </table>\n",
"\n",
" \n",
"\n",
" \n",
" <details>\n",
" <summary style=\"margin-bottom: 20px;\"><h3 style=\"display: inline;\">Cluster Info</h3></summary>\n",
" <div class=\"jp-RenderedHTMLCommon jp-RenderedHTML jp-mod-trusted jp-OutputArea-output\">\n",
" <div style=\"width: 24px; height: 24px; background-color: #e1e1e1; border: 3px solid #9D9D9D; border-radius: 5px; position: absolute;\">\n",
" </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <h3 style=\"margin-bottom: 0px; margin-top: 0px;\">LocalCluster</h3>\n",
" <p style=\"color: #9D9D9D; margin-bottom: 0px;\">b16f0063</p>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard:</strong> <a href=\"http://127.0.0.1:8787/status\" target=\"_blank\">http://127.0.0.1:8787/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Workers:</strong> 6\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads:</strong> 60\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total memory:</strong> 55.88 GiB\n",
" </td>\n",
" </tr>\n",
" \n",
" <tr>\n",
" <td style=\"text-align: left;\"><strong>Status:</strong> running</td>\n",
" <td style=\"text-align: left;\"><strong>Using processes:</strong> True</td>\n",
"</tr>\n",
"\n",
" \n",
" </table>\n",
"\n",
" <details>\n",
" <summary style=\"margin-bottom: 20px;\">\n",
" <h3 style=\"display: inline;\">Scheduler Info</h3>\n",
" </summary>\n",
"\n",
" <div style=\"\">\n",
" <div>\n",
" <div style=\"width: 24px; height: 24px; background-color: #FFF7E5; border: 3px solid #FF6132; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <h3 style=\"margin-bottom: 0px;\">Scheduler</h3>\n",
" <p style=\"color: #9D9D9D; margin-bottom: 0px;\">Scheduler-8571d7e2-e6e5-4263-a9ed-50018e90379b</p>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm:</strong> tcp://127.0.0.1:55356\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Workers:</strong> 6\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard:</strong> <a href=\"http://127.0.0.1:8787/status\" target=\"_blank\">http://127.0.0.1:8787/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads:</strong> 60\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Started:</strong> Just now\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total memory:</strong> 55.88 GiB\n",
" </td>\n",
" </tr>\n",
" </table>\n",
" </div>\n",
" </div>\n",
"\n",
" <details style=\"margin-left: 48px;\">\n",
" <summary style=\"margin-bottom: 20px;\">\n",
" <h3 style=\"display: inline;\">Workers</h3>\n",
" </summary>\n",
"\n",
" \n",
" <div style=\"margin-bottom: 20px;\">\n",
" <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <details>\n",
" <summary>\n",
" <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 0</h4>\n",
" </summary>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm: </strong> tcp://127.0.0.1:55387\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads: </strong> 10\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:55388/status\" target=\"_blank\">http://127.0.0.1:55388/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Memory: </strong> 9.31 GiB\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Nanny: </strong> tcp://127.0.0.1:55359\n",
" </td>\n",
" <td style=\"text-align: left;\"></td>\n",
" </tr>\n",
" <tr>\n",
" <td colspan=\"2\" style=\"text-align: left;\">\n",
" <strong>Local directory: </strong> C:\\Users\\data\\AppData\\Local\\Temp\\dask-worker-space\\worker-646bafev\n",
" </td>\n",
" </tr>\n",
"\n",
" \n",
"\n",
" \n",
"\n",
" </table>\n",
" </details>\n",
" </div>\n",
" </div>\n",
" \n",
" <div style=\"margin-bottom: 20px;\">\n",
" <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <details>\n",
" <summary>\n",
" <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 1</h4>\n",
" </summary>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm: </strong> tcp://127.0.0.1:55374\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads: </strong> 10\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:55385/status\" target=\"_blank\">http://127.0.0.1:55385/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Memory: </strong> 9.31 GiB\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Nanny: </strong> tcp://127.0.0.1:55360\n",
" </td>\n",
" <td style=\"text-align: left;\"></td>\n",
" </tr>\n",
" <tr>\n",
" <td colspan=\"2\" style=\"text-align: left;\">\n",
" <strong>Local directory: </strong> C:\\Users\\data\\AppData\\Local\\Temp\\dask-worker-space\\worker-i7cnpql6\n",
" </td>\n",
" </tr>\n",
"\n",
" \n",
"\n",
" \n",
"\n",
" </table>\n",
" </details>\n",
" </div>\n",
" </div>\n",
" \n",
" <div style=\"margin-bottom: 20px;\">\n",
" <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <details>\n",
" <summary>\n",
" <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 2</h4>\n",
" </summary>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm: </strong> tcp://127.0.0.1:55390\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads: </strong> 10\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:55392/status\" target=\"_blank\">http://127.0.0.1:55392/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Memory: </strong> 9.31 GiB\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Nanny: </strong> tcp://127.0.0.1:55361\n",
" </td>\n",
" <td style=\"text-align: left;\"></td>\n",
" </tr>\n",
" <tr>\n",
" <td colspan=\"2\" style=\"text-align: left;\">\n",
" <strong>Local directory: </strong> C:\\Users\\data\\AppData\\Local\\Temp\\dask-worker-space\\worker-cm12p6g3\n",
" </td>\n",
" </tr>\n",
"\n",
" \n",
"\n",
" \n",
"\n",
" </table>\n",
" </details>\n",
" </div>\n",
" </div>\n",
" \n",
" <div style=\"margin-bottom: 20px;\">\n",
" <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <details>\n",
" <summary>\n",
" <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 3</h4>\n",
" </summary>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm: </strong> tcp://127.0.0.1:55391\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads: </strong> 10\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:55393/status\" target=\"_blank\">http://127.0.0.1:55393/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Memory: </strong> 9.31 GiB\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Nanny: </strong> tcp://127.0.0.1:55362\n",
" </td>\n",
" <td style=\"text-align: left;\"></td>\n",
" </tr>\n",
" <tr>\n",
" <td colspan=\"2\" style=\"text-align: left;\">\n",
" <strong>Local directory: </strong> C:\\Users\\data\\AppData\\Local\\Temp\\dask-worker-space\\worker-ift1r1_n\n",
" </td>\n",
" </tr>\n",
"\n",
" \n",
"\n",
" \n",
"\n",
" </table>\n",
" </details>\n",
" </div>\n",
" </div>\n",
" \n",
" <div style=\"margin-bottom: 20px;\">\n",
" <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <details>\n",
" <summary>\n",
" <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 4</h4>\n",
" </summary>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm: </strong> tcp://127.0.0.1:55396\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads: </strong> 10\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:55397/status\" target=\"_blank\">http://127.0.0.1:55397/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Memory: </strong> 9.31 GiB\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Nanny: </strong> tcp://127.0.0.1:55363\n",
" </td>\n",
" <td style=\"text-align: left;\"></td>\n",
" </tr>\n",
" <tr>\n",
" <td colspan=\"2\" style=\"text-align: left;\">\n",
" <strong>Local directory: </strong> C:\\Users\\data\\AppData\\Local\\Temp\\dask-worker-space\\worker-n0ircagt\n",
" </td>\n",
" </tr>\n",
"\n",
" \n",
"\n",
" \n",
"\n",
" </table>\n",
" </details>\n",
" </div>\n",
" </div>\n",
" \n",
" <div style=\"margin-bottom: 20px;\">\n",
" <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <details>\n",
" <summary>\n",
" <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 5</h4>\n",
" </summary>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm: </strong> tcp://127.0.0.1:55399\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads: </strong> 10\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:55400/status\" target=\"_blank\">http://127.0.0.1:55400/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Memory: </strong> 9.31 GiB\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Nanny: </strong> tcp://127.0.0.1:55364\n",
" </td>\n",
" <td style=\"text-align: left;\"></td>\n",
" </tr>\n",
" <tr>\n",
" <td colspan=\"2\" style=\"text-align: left;\">\n",
" <strong>Local directory: </strong> C:\\Users\\data\\AppData\\Local\\Temp\\dask-worker-space\\worker-tym7j5xi\n",
" </td>\n",
" </tr>\n",
"\n",
" \n",
"\n",
" \n",
"\n",
" </table>\n",
" </details>\n",
" </div>\n",
" </div>\n",
" \n",
"\n",
" </details>\n",
"</div>\n",
"\n",
" </details>\n",
" </div>\n",
"</div>\n",
" </details>\n",
" \n",
"\n",
" </div>\n",
"</div>"
],
"text/plain": [
"<Client: 'tcp://127.0.0.1:55356' processes=6 threads=60, memory=55.88 GiB>"
]
},
"execution_count": 2,
"metadata": {},
"output_type": "execute_result"
}
],
finish of fitting
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"source": [
"from dask.distributed import Client\n",
"client = Client(n_workers=6, threads_per_worker=10, processes=True, memory_limit='10GB')\n",
"client"
]
},
{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"# Read data"
]
},
{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"## Set file path"
]
},
{
"cell_type": "code",
add tool function
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"execution_count": 3,
finish reading from hdf5
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"metadata": {},
"outputs": [],
"source": [
first working version
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"# filepath = \"//DyLabNAS/Data/Evaporative_Cooling/2023/05/03/0043/*.h5\"\n",
finish reading from hdf5
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"# filepath = \"//DyLabNAS/Data/Evaporative_Cooling/2023/04/18/0003/2023-04-18_0003_Evaporative_Cooling_000.h5\"\n",
"\n",
first working version
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"filepath = \"//DyLabNAS/Data/Repetition_scan/2023/04/21/0002/*.h5\"\n",
finish of fitting
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"\n",
first working version
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"# filepath = r\"./testData/0000/*.h5\"\n",
finish reading from hdf5
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"\n",
first working version
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"# filepath = \"//DyLabNAS/Data/Evaporative_Cooling/2023/04/18/0003/*.h5\""
finish of fitting
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]
},
{
"cell_type": "code",
add tool function
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"execution_count": 4,
finish of fitting
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"metadata": {},
"outputs": [],
"source": [
finish reading from hdf5
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"groupList = [\n",
" \"images/MOT_3D_Camera/in_situ_absorption\",\n",
finish of fitting
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" # \"images/ODT_1_Axis_Camera/in_situ_absorption\",\n",
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"]\n",
"\n",
"dskey = {\n",
" \"images/MOT_3D_Camera/in_situ_absorption\": \"camera_1\",\n",
finish of fitting
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" # \"images/ODT_1_Axis_Camera/in_situ_absorption\": \"camera_2\",\n",
finish reading from hdf5
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"}\n",
"\n",
add tool function
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"dataSetDict = {\n",
finish reading from hdf5
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" dskey[groupList[i]]: read_hdf5_file(filepath, groupList[i])\n",
" for i in range(len(groupList))\n",
"}"
]
},
add tool function
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{
"cell_type": "code",
"execution_count": 37,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Today's date: 2023-05-04\n",
"d3 = 23/05/04\n",
"True\n"
]
}
],
"source": [
"from datetime import date\n",
"\n",
"today = date.today()\n",
"print(\"Today's date:\", today)\n",
"\n",
"d3 = today.strftime(\"%y/%m/%d\")\n",
"print(\"d3 =\", d3)\n",
"print(isinstance(d3, str))"
]
},
finish of fitting
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{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"## Rechunk the data for parallel computing"
]
},
finish reading from hdf5
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{
"cell_type": "code",
add tool function
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"execution_count": 5,
finish of fitting
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"metadata": {},
"outputs": [],
"source": [
add tool function
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"dataSet = dataSetDict[\"camera_1\"]\n",
finish of fitting
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"\n",
add tool function
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"scanAxis = dataSet.scanAxis\n",
finish of fitting
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"\n",
add tool function
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"# dataSet = dataSet.chunk(\n",
first working version
2023-05-04 18:32:17 +02:00
"# {\n",
"# # \"compZ_current_sg\": \"auto\",\n",
"# \"sin_mod_freq\": \"auto\",\n",
"# \"runs\": 2,\n",
"# \"x\": \"auto\",\n",
"# \"y\": \"auto\",\n",
"# }\n",
"# )"
finish of fitting
2023-05-04 13:47:33 +02:00
]
},
add tool function
2023-05-04 19:16:35 +02:00
{
"cell_type": "code",
"execution_count": 27,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"final_amp\n",
"runs\n",
"x\n",
"y\n"
]
}
],
"source": [
"for key in dataset.dims.keys():\n",
" print(key)"
]
},
finish of fitting
2023-05-04 13:47:33 +02:00
{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"# Calculate absorption imaging"
]
},
{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"## get OD images"
]
},
{
"cell_type": "code",
add tool function
2023-05-04 19:16:35 +02:00
"execution_count": 13,
finish reading from hdf5
2023-04-24 13:03:23 +02:00
"metadata": {},
add tool function
2023-05-04 19:16:35 +02:00
"outputs": [
{
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"</style><pre class='xr-text-repr-fallback'>&lt;xarray.Dataset&gt;\n",
"Dimensions: (final_amp: 11, runs: 3, x: 1200, y: 1920)\n",
"Coordinates:\n",
" * final_amp (final_amp) float64 3e-05 5.5e-05 8e-05 ... 0.000255 0.00028\n",
" * runs (runs) float64 0.0 1.0 2.0\n",
"Dimensions without coordinates: x, y\n",
"Data variables:\n",
" atoms (final_amp, runs, x, y) uint16 dask.array&lt;chunksize=(1, 1, 1200, 1920), meta=np.ndarray&gt;\n",
" background (final_amp, runs, x, y) uint16 dask.array&lt;chunksize=(1, 1, 1200, 1920), meta=np.ndarray&gt;\n",
" dark (final_amp, runs, x, y) uint16 dask.array&lt;chunksize=(1, 1, 1200, 1920), meta=np.ndarray&gt;\n",
" shotNum (final_amp, runs) &lt;U2 &#x27;00&#x27; &#x27;11&#x27; &#x27;22&#x27; &#x27;01&#x27; ... &#x27;10&#x27; &#x27;21&#x27; &#x27;32&#x27;\n",
" OD (final_amp, runs, x, y) float64 dask.array&lt;chunksize=(1, 1, 1200, 1920), meta=np.ndarray&gt;\n",
"Attributes: (12/96)\n",
" TOF_free: 0.01\n",
" abs_img_freq: 110.858\n",
" absorption_imaging_flag: True\n",
" backup_data: True\n",
" blink_off_time: nan\n",
" blink_on_time: nan\n",
" ... ...\n",
" z_offset: 0.189\n",
" z_offset_img: 0.189\n",
" final_amp: [3.00e-05 5.50e-05 8.00e-05 1.05e-04 1...\n",
" runs: [0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 1. 1...\n",
" scanAxis: [&#x27;final_amp&#x27;, &#x27;runs&#x27;]\n",
" scanAxisLength: [33. 33.]</pre><div class='xr-wrap' style='display:none'><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-75ba97bc-9621-4afe-b001-9bb26271bdf6' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-75ba97bc-9621-4afe-b001-9bb26271bdf6' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span class='xr-has-index'>final_amp</span>: 11</li><li><span class='xr-has-index'>runs</span>: 3</li><li><span>x</span>: 1200</li><li><span>y</span>: 1920</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-3a3dd7c7-b998-45be-a8f0-0220e70ec50d' class='xr-section-summary-in' type='checkbox' checked><label for='section-3a3dd7c7-b998-45be-a8f0-0220e70ec50d' class='xr-section-summary' >Coordinates: <span>(2)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>final_amp</span></div><div class='xr-var-dims'>(final_amp)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>3e-05 5.5e-05 ... 0.000255 0.00028</div><input id='attrs-e71aec16-37c8-4d15-92f7-7c07c453ad84' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-e71aec16-37c8-4d15-92f7-7c07c453ad84' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-3a6b0497-eb5e-474c-9305-57ffee605bc6' class='xr-var-data-in' type='checkbox'><label for='data-3a6b0497-eb5e-474c-9305-57ffee605bc6' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([3.00e-05, 5.50e-05, 8.00e-05, 1.05e-04, 1.30e-04, 1.55e-04, 1.80e-04,\n",
" 2.05e-04, 2.30e-04, 2.55e-04, 2.80e-04])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>runs</span></div><div class='xr-var-dims'>(runs)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.0 1.0 2.0</div><input id='attrs-6c4aa9f0-4255-4b50-bb8a-21ee59b1441c' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-6c4aa9f0-4255-4b50-bb8a-21ee59b1441c' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-f0717a66-9cd5-4966-9c5e-4c9016b6a6b1' class='xr-var-data-in' type='checkbox'><label for='data-f0717a66-9cd5-4966-9c5e-4c9016b6a6b1' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([0., 1., 2.])</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-fe5868c3-08f4-4277-8d31-22daf965bb08' class='xr-section-summary-in' type='checkbox' checked><label for='section-fe5868c3-08f4-4277-8d31-22daf965bb08' class='xr-section-summary' >Data variables: <span>(5)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>atoms</span></div><div class='xr-var-dims'>(final_amp, runs, x, y)</div><div class='xr-var-dtype'>uint16</div><div class='xr-var-preview xr-preview'>dask.array&lt;chunksize=(1, 1, 1200, 1920), meta=np.ndarray&gt;</div><input id='attrs-ad01a2dd-abb1-4af8-a0e6-8b9aae6d9ab6' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-ad01a2dd-abb1-4af8-a0e6-8b9aae6d9ab6' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-ad2a2aa9-5b3e-4033-aebb-ab888342a38d' class='xr-var-data-in' type='checkbox'><label for='data-ad2a2aa9-5b3e-4033-aebb-ab888342a38d' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>IMAGE_SUBCLASS :</span></dt><dd>IMAGE_GRAYSCALE</dd><dt><span>IMAGE_VERSION :</span></dt><dd>1.2</dd><dt><span>IMAGE_WHITE_IS_ZERO :</span></dt><dd>0</dd></dl></div><div class='xr-var-data'><table>\n",
" <tr>\n",
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" <tbody>\n",
" \n",
" <tr>\n",
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" <td> 145.02 MiB </td>\n",
" <td> 4.39 MiB </td>\n",
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" \n",
" <tr>\n",
" <th> Shape </th>\n",
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" <td> (1, 1, 1200, 1920) </td>\n",
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" <tr>\n",
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],
"text/plain": [
"<xarray.Dataset>\n",
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"Coordinates:\n",
" * final_amp (final_amp) float64 3e-05 5.5e-05 8e-05 ... 0.000255 0.00028\n",
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" background (final_amp, runs, x, y) uint16 dask.array<chunksize=(1, 1, 1200, 1920), meta=np.ndarray>\n",
" dark (final_amp, runs, x, y) uint16 dask.array<chunksize=(1, 1, 1200, 1920), meta=np.ndarray>\n",
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" OD (final_amp, runs, x, y) float64 dask.array<chunksize=(1, 1, 1200, 1920), meta=np.ndarray>\n",
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" TOF_free: 0.01\n",
" abs_img_freq: 110.858\n",
" absorption_imaging_flag: True\n",
" backup_data: True\n",
" blink_off_time: nan\n",
" blink_on_time: nan\n",
" ... ...\n",
" z_offset: 0.189\n",
" z_offset_img: 0.189\n",
" final_amp: [3.00e-05 5.50e-05 8.00e-05 1.05e-04 1...\n",
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]
},
"execution_count": 13,
"metadata": {},
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}
],
"source": [
"dataSet = imageAnalyser.get_absorption_images(dataSet)\n",
"\n",
"dataSet"
]
},
{
"cell_type": "code",
"execution_count": 18,
"metadata": {},
"outputs": [
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"}\n",
"\n",
".xr-section-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-section-item input {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-item input + label {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label {\n",
" cursor: pointer;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label:hover {\n",
" color: var(--xr-font-color0);\n",
"}\n",
"\n",
".xr-section-summary {\n",
" grid-column: 1;\n",
" color: var(--xr-font-color2);\n",
" font-weight: 500;\n",
"}\n",
"\n",
".xr-section-summary > span {\n",
" display: inline-block;\n",
" padding-left: 0.5em;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-summary-in + label:before {\n",
" display: inline-block;\n",
" content: 'â–º';\n",
" font-size: 11px;\n",
" width: 15px;\n",
" text-align: center;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label:before {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label:before {\n",
" content: 'â–¼';\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-index-preview {\n",
" grid-column: 2 / 5;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data,\n",
".xr-index-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data,\n",
".xr-index-data-in:checked ~ .xr-index-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-index-name div,\n",
".xr-index-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data,\n",
".xr-index-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt,\n",
".xr-attrs dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2,\n",
".xr-no-icon {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><pre class='xr-text-repr-fallback'>&lt;xarray.Dataset&gt;\n",
"Dimensions: (final_amp: 11, runs: 3, x: 1200, y: 1920)\n",
"Coordinates:\n",
" * final_amp (final_amp) float64 3e-05 5.5e-05 8e-05 ... 0.000255 0.00028\n",
" * runs (runs) float64 0.0 1.0 2.0\n",
"Dimensions without coordinates: x, y\n",
"Data variables:\n",
" atoms (final_amp, runs, x, y) uint16 98 101 109 106 ... 146 140 140\n",
" background (final_amp, runs, x, y) uint16 99 101 113 103 ... 147 137 137\n",
" dark (final_amp, runs, x, y) uint16 50 51 51 50 50 ... 50 51 50 49 49\n",
" shotNum (final_amp, runs) &lt;U2 &#x27;00&#x27; &#x27;11&#x27; &#x27;22&#x27; &#x27;01&#x27; ... &#x27;10&#x27; &#x27;21&#x27; &#x27;32&#x27;\n",
" OD (final_amp, runs, x, y) float64 nan nan ... -0.03352 -0.03352\n",
"Attributes: (12/96)\n",
" TOF_free: 0.01\n",
" abs_img_freq: 110.858\n",
" absorption_imaging_flag: True\n",
" backup_data: True\n",
" blink_off_time: nan\n",
" blink_on_time: nan\n",
" ... ...\n",
" z_offset: 0.189\n",
" z_offset_img: 0.189\n",
" final_amp: [3.00e-05 5.50e-05 8.00e-05 1.05e-04 1...\n",
" runs: [0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 1. 1...\n",
" scanAxis: [&#x27;final_amp&#x27;, &#x27;runs&#x27;]\n",
" scanAxisLength: [33. 33.]</pre><div class='xr-wrap' style='display:none'><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-949b61aa-ea36-4d24-8d4f-b6898b8e2d9b' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-949b61aa-ea36-4d24-8d4f-b6898b8e2d9b' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span class='xr-has-index'>final_amp</span>: 11</li><li><span class='xr-has-index'>runs</span>: 3</li><li><span>x</span>: 1200</li><li><span>y</span>: 1920</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-c525ebef-92d9-46c0-a695-037daf75006e' class='xr-section-summary-in' type='checkbox' checked><label for='section-c525ebef-92d9-46c0-a695-037daf75006e' class='xr-section-summary' >Coordinates: <span>(2)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>final_amp</span></div><div class='xr-var-dims'>(final_amp)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>3e-05 5.5e-05 ... 0.000255 0.00028</div><input id='attrs-a0f1df42-d3fc-4497-9a56-3144d491e584' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-a0f1df42-d3fc-4497-9a56-3144d491e584' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-94fedd00-d478-4658-8bf9-325195aad768' class='xr-var-data-in' type='checkbox'><label for='data-94fedd00-d478-4658-8bf9-325195aad768' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([3.00e-05, 5.50e-05, 8.00e-05, 1.05e-04, 1.30e-04, 1.55e-04, 1.80e-04,\n",
" 2.05e-04, 2.30e-04, 2.55e-04, 2.80e-04])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>runs</span></div><div class='xr-var-dims'>(runs)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.0 1.0 2.0</div><input id='attrs-17b013fa-a779-4807-878c-e27156cae06e' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-17b013fa-a779-4807-878c-e27156cae06e' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-24a8a50b-5b08-433c-814f-ff80937dd051' class='xr-var-data-in' type='checkbox'><label for='data-24a8a50b-5b08-433c-814f-ff80937dd051' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([0., 1., 2.])</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-06679ba1-8da3-4bae-835a-ef2f929da44c' class='xr-section-summary-in' type='checkbox' checked><label for='section-06679ba1-8da3-4bae-835a-ef2f929da44c' class='xr-section-summary' >Data variables: <span>(5)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>atoms</span></div><div class='xr-var-dims'>(final_amp, runs, x, y)</div><div class='xr-var-dtype'>uint16</div><div class='xr-var-preview xr-preview'>98 101 109 106 ... 146 146 140 140</div><input id='attrs-ef7376b6-d6d5-496c-aee3-899aecd26ae4' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-ef7376b6-d6d5-496c-aee3-899aecd26ae4' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-68e15cbf-1931-48f0-a223-bc56634d11af' class='xr-var-data-in' type='checkbox'><label for='data-68e15cbf-1931-48f0-a223-bc56634d11af' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>IMAGE_SUBCLASS :</span></dt><dd>IMAGE_GRAYSCALE</dd><dt><span>IMAGE_VERSION :</span></dt><dd>1.2</dd><dt><span>IMAGE_WHITE_IS_ZERO :</span></dt><dd>0</dd></dl></div><div class='xr-var-data'><pre>array([[[[ 98, 101, 109, ..., 150, 147, 156],\n",
" [102, 105, 106, ..., 142, 145, 143],\n",
" [ 95, 97, 106, ..., 147, 133, 146],\n",
" ...,\n",
" [106, 112, 111, ..., 159, 153, 152],\n",
" [112, 117, 115, ..., 161, 159, 148],\n",
" [110, 117, 116, ..., 144, 150, 135]],\n",
"\n",
" [[ 97, 99, 105, ..., 147, 142, 150],\n",
" [ 96, 97, 103, ..., 148, 142, 144],\n",
" [ 93, 100, 105, ..., 139, 136, 141],\n",
" ...,\n",
" [112, 113, 112, ..., 160, 157, 145],\n",
" [112, 124, 116, ..., 157, 149, 144],\n",
" [117, 113, 112, ..., 142, 134, 143]],\n",
"\n",
" [[105, 98, 109, ..., 143, 144, 145],\n",
" [ 96, 99, 104, ..., 150, 137, 157],\n",
" [ 96, 92, 105, ..., 142, 138, 141],\n",
" ...,\n",
"...\n",
" ...,\n",
" [111, 109, 110, ..., 158, 159, 145],\n",
" [113, 110, 114, ..., 151, 155, 144],\n",
" [115, 118, 115, ..., 141, 143, 138]],\n",
"\n",
" [[106, 105, 105, ..., 154, 143, 145],\n",
" [101, 100, 102, ..., 148, 143, 151],\n",
" [ 95, 95, 106, ..., 141, 143, 143],\n",
" ...,\n",
" [110, 107, 109, ..., 159, 156, 148],\n",
" [113, 113, 119, ..., 154, 154, 140],\n",
" [112, 120, 114, ..., 140, 139, 140]],\n",
"\n",
" [[108, 99, 107, ..., 142, 147, 148],\n",
" [ 94, 95, 106, ..., 138, 139, 142],\n",
" [ 93, 101, 105, ..., 136, 140, 138],\n",
" ...,\n",
" [107, 111, 115, ..., 149, 158, 152],\n",
" [105, 118, 111, ..., 152, 149, 138],\n",
" [117, 123, 117, ..., 146, 140, 140]]]], dtype=uint16)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>background</span></div><div class='xr-var-dims'>(final_amp, runs, x, y)</div><div class='xr-var-dtype'>uint16</div><div class='xr-var-preview xr-preview'>99 101 113 103 ... 145 147 137 137</div><input id='attrs-3795a5e3-2346-4f40-8168-6c28f529863f' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-3795a5e3-2346-4f40-8168-6c28f529863f' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-970db8a1-e319-4f63-981c-1b8a6d167dcd' class='xr-var-data-in' type='checkbox'><label for='data-970db8a1-e319-4f63-981c-1b8a6d167dcd' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>IMAGE_SUBCLASS :</span></dt><dd>IMAGE_GRAYSCALE</dd><dt><span>IMAGE_VERSION :</span></dt><dd>1.2</dd><dt><span>IMAGE_WHITE_IS_ZERO :</span></dt><dd>0</dd></dl></div><div class='xr-var-data'><pre>array([[[[ 99, 101, 113, ..., 146, 143, 146],\n",
" [ 97, 103, 104, ..., 145, 140, 154],\n",
" [ 97, 103, 110, ..., 146, 132, 139],\n",
" ...,\n",
" [112, 112, 114, ..., 155, 152, 147],\n",
" [112, 119, 117, ..., 154, 150, 149],\n",
" [112, 111, 112, ..., 143, 142, 137]],\n",
"\n",
" [[ 98, 100, 107, ..., 141, 150, 146],\n",
" [100, 97, 106, ..., 147, 146, 142],\n",
" [ 91, 97, 102, ..., 140, 139, 137],\n",
" ...,\n",
" [108, 114, 110, ..., 153, 153, 147],\n",
" [114, 116, 115, ..., 150, 148, 143],\n",
" [111, 111, 119, ..., 136, 138, 140]],\n",
"\n",
" [[ 99, 97, 111, ..., 144, 140, 150],\n",
" [ 96, 98, 107, ..., 142, 141, 154],\n",
" [ 94, 100, 102, ..., 149, 140, 141],\n",
" ...,\n",
"...\n",
" ...,\n",
" [109, 118, 108, ..., 158, 148, 152],\n",
" [111, 117, 111, ..., 155, 152, 138],\n",
" [120, 120, 120, ..., 144, 129, 134]],\n",
"\n",
" [[103, 102, 111, ..., 148, 146, 148],\n",
" [ 98, 105, 103, ..., 151, 149, 150],\n",
" [ 99, 99, 100, ..., 143, 140, 144],\n",
" ...,\n",
" [112, 107, 113, ..., 152, 164, 151],\n",
" [114, 118, 118, ..., 153, 152, 147],\n",
" [117, 114, 116, ..., 145, 139, 141]],\n",
"\n",
" [[103, 100, 111, ..., 142, 150, 147],\n",
" [100, 98, 106, ..., 141, 140, 143],\n",
" [ 98, 98, 102, ..., 143, 140, 144],\n",
" ...,\n",
" [109, 107, 112, ..., 154, 157, 146],\n",
" [116, 117, 113, ..., 151, 150, 145],\n",
" [111, 113, 114, ..., 147, 137, 137]]]], dtype=uint16)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>dark</span></div><div class='xr-var-dims'>(final_amp, runs, x, y)</div><div class='xr-var-dtype'>uint16</div><div class='xr-var-preview xr-preview'>50 51 51 50 50 ... 50 51 50 49 49</div><input id='attrs-080cd5a3-797b-43c4-bad3-7f581574ef2b' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-080cd5a3-797b-43c4-bad3-7f581574ef2b' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-4130f6a3-a596-48c9-ba65-891169a01b84' class='xr-var-data-in' type='checkbox'><label for='data-4130f6a3-a596-48c9-ba65-891169a01b84' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>IMAGE_SUBCLASS :</span></dt><dd>IMAGE_GRAYSCALE</dd><dt><span>IMAGE_VERSION :</span></dt><dd>1.2</dd><dt><span>IMAGE_WHITE_IS_ZERO :</span></dt><dd>0</dd></dl></div><div class='xr-var-data'><pre>array([[[[50, 51, 51, ..., 51, 52, 51],\n",
" [49, 50, 49, ..., 51, 50, 49],\n",
" [51, 49, 49, ..., 51, 50, 50],\n",
" ...,\n",
" [50, 51, 51, ..., 50, 50, 51],\n",
" [51, 50, 52, ..., 50, 51, 51],\n",
" [51, 50, 51, ..., 50, 50, 49]],\n",
"\n",
" [[51, 51, 51, ..., 48, 50, 52],\n",
" [50, 51, 52, ..., 49, 52, 50],\n",
" [51, 51, 51, ..., 50, 49, 51],\n",
" ...,\n",
" [50, 50, 50, ..., 49, 49, 52],\n",
" [51, 50, 50, ..., 50, 51, 50],\n",
" [51, 51, 50, ..., 50, 50, 51]],\n",
"\n",
" [[50, 50, 51, ..., 51, 51, 49],\n",
" [52, 50, 50, ..., 51, 51, 51],\n",
" [50, 50, 49, ..., 51, 50, 50],\n",
" ...,\n",
"...\n",
" ...,\n",
" [50, 50, 50, ..., 50, 50, 50],\n",
" [48, 51, 50, ..., 50, 49, 49],\n",
" [52, 50, 51, ..., 50, 49, 50]],\n",
"\n",
" [[50, 50, 49, ..., 52, 50, 51],\n",
" [52, 50, 50, ..., 50, 49, 49],\n",
" [49, 50, 50, ..., 50, 51, 49],\n",
" ...,\n",
" [49, 51, 52, ..., 52, 50, 50],\n",
" [51, 51, 51, ..., 51, 50, 50],\n",
" [50, 50, 50, ..., 50, 50, 51]],\n",
"\n",
" [[50, 49, 51, ..., 50, 50, 50],\n",
" [51, 51, 50, ..., 51, 51, 52],\n",
" [51, 51, 52, ..., 51, 49, 51],\n",
" ...,\n",
" [50, 50, 50, ..., 50, 50, 50],\n",
" [50, 51, 51, ..., 51, 50, 50],\n",
" [50, 50, 48, ..., 50, 49, 49]]]], dtype=uint16)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>shotNum</span></div><div class='xr-var-dims'>(final_amp, runs)</div><div class='xr-var-dtype'>&lt;U2</div><div class='xr-var-preview xr-preview'>&#x27;00&#x27; &#x27;11&#x27; &#x27;22&#x27; ... &#x27;10&#x27; &#x27;21&#x27; &#x27;32&#x27;</div><input id='attrs-af436924-4f7b-4c52-a631-6815c461f586' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-af436924-4f7b-4c52-a631-6815c461f586' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-4ac60779-6750-40d4-a34a-438d6f5325b5' class='xr-var-data-in' type='checkbox'><label for='data-4ac60779-6750-40d4-a34a-438d6f5325b5' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([[&#x27;00&#x27;, &#x27;11&#x27;, &#x27;22&#x27;],\n",
" [&#x27;01&#x27;, &#x27;12&#x27;, &#x27;23&#x27;],\n",
" [&#x27;02&#x27;, &#x27;13&#x27;, &#x27;24&#x27;],\n",
" [&#x27;03&#x27;, &#x27;14&#x27;, &#x27;25&#x27;],\n",
" [&#x27;04&#x27;, &#x27;15&#x27;, &#x27;26&#x27;],\n",
" [&#x27;05&#x27;, &#x27;16&#x27;, &#x27;27&#x27;],\n",
" [&#x27;06&#x27;, &#x27;17&#x27;, &#x27;28&#x27;],\n",
" [&#x27;07&#x27;, &#x27;18&#x27;, &#x27;29&#x27;],\n",
" [&#x27;08&#x27;, &#x27;19&#x27;, &#x27;30&#x27;],\n",
" [&#x27;09&#x27;, &#x27;20&#x27;, &#x27;31&#x27;],\n",
" [&#x27;10&#x27;, &#x27;21&#x27;, &#x27;32&#x27;]], dtype=&#x27;&lt;U2&#x27;)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>OD</span></div><div class='xr-var-dims'>(final_amp, runs, x, y)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>nan nan nan ... -0.03352 -0.03352</div><input id='attrs-a2fdb871-0347-4b10-bf56-ead2eda88f59' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-a2fdb871-0347-4b10-bf56-ead2eda88f59' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-a6f314ea-3e80-46a4-998a-15628b22bb86' class='xr-var-data-in' type='checkbox'><label for='data-a6f314ea-3e80-46a4-998a-15628b22bb86' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>IMAGE_SUBCLASS :</span></dt><dd>IMAGE_GRAYSCALE</dd><dt><span>IMAGE_VERSION :</span></dt><dd>1.2</dd><dt><span>IMAGE_WHITE_IS_ZERO :</span></dt><dd>0</dd></dl></div><div class='xr-var-data'><pre>array([[[[ nan, nan, nan, ..., nan,\n",
" nan, nan],\n",
" [ nan, nan, nan, ..., nan,\n",
" nan, nan],\n",
" [ nan, nan, nan, ..., nan,\n",
" nan, nan],\n",
" ...,\n",
" [ nan, nan, nan, ..., nan,\n",
" nan, nan],\n",
" [ nan, nan, nan, ..., nan,\n",
" nan, nan],\n",
" [ nan, nan, nan, ..., nan,\n",
" nan, nan]],\n",
"\n",
" [[ nan, nan, nan, ..., nan,\n",
" nan, nan],\n",
" [ nan, nan, nan, ..., nan,\n",
" nan, nan],\n",
" [ nan, nan, nan, ..., nan,\n",
" nan, nan],\n",
"...\n",
" [ nan, nan, nan, ..., nan,\n",
" nan, nan],\n",
" [ nan, nan, nan, ..., nan,\n",
" nan, nan],\n",
" [ nan, nan, nan, ..., nan,\n",
" nan, nan]],\n",
"\n",
" [[-0.0901511 , 0.01980263, 0.06899287, ..., -0. ,\n",
" 0.03045921, -0.0102565 ],\n",
" [ 0.13062018, 0.06595797, -0. , ..., 0.03390155,\n",
" 0.01129956, 0.01104984],\n",
" [ 0.11247798, -0.0618754 , -0.05826891, ..., 0.07913732,\n",
" -0. , 0.06669137],\n",
" ...,\n",
" [ 0.03448618, -0.0678226 , -0.04725288, ..., 0.04927105,\n",
" -0.00930239, -0.06062462],\n",
" [ 0.18232156, -0.01503788, 0.03278982, ..., -0.00995033,\n",
" 0.01005034, 0.07654008],\n",
" [-0.09381876, -0.14732471, -0.04445176, ..., 0.01036279,\n",
" -0.03352269, -0.03352269]]]])</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-93d409dc-6e21-4170-9c26-e3a694c72f0f' class='xr-section-summary-in' type='checkbox' ><label for='section-93d409dc-6e21-4170-9c26-e3a694c72f0f' class='xr-section-summary' >Indexes: <span>(2)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-index-name'><div>final_amp</div></div><div class='xr-index-preview'>PandasIndex</div><div></div><input id='index-6881df01-c250-40f5-970f-bcce451a1f40' class='xr-index-data-in' type='checkbox'/><label for='index-6881df01-c250-40f5-970f-bcce451a1f40' title='Show/Hide index repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-index-data'><pre>PandasIndex(Float64Index([ 3e-05, 5.5e-05, 8e-05, 0.000105, 0.00013, 0.000155,\n",
" 0.00018, 0.000205, 0.00023, 0.000255, 0.00028],\n",
" dtype=&#x27;float64&#x27;, name=&#x27;final_amp&#x27;))</pre></div></li><li class='xr-var-item'><div class='xr-index-name'><div>runs</div></div><div class='xr-index-preview'>PandasIndex</div><div></div><input id='index-db489bc8-fca3-4858-9833-95bbd94b728c' class='xr-index-data-in' type='checkbox'/><label for='index-db489bc8-fca3-4858-9833-95bbd94b728c' title='Show/Hide index repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-index-data'><pre>PandasIndex(Float64Index([0.0, 1.0, 2.0], dtype=&#x27;float64&#x27;, name=&#x27;runs&#x27;))</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-499916ad-c41c-451f-a8d8-a778d08b5bc5' class='xr-section-summary-in' type='checkbox' ><label for='section-499916ad-c41c-451f-a8d8-a778d08b5bc5' class='xr-section-summary' >Attributes: <span>(96)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'><dt><span>TOF_free :</span></dt><dd>0.01</dd><dt><span>abs_img_freq :</span></dt><dd>110.858</dd><dt><span>absorption_imaging_flag :</span></dt><dd>True</dd><dt><span>backup_data :</span></dt><dd>True</dd><dt><span>blink_off_time :</span></dt><dd>nan</dd><dt><span>blink_on_time :</span></dt><dd>nan</dd><dt><span>c_duration :</span></dt><dd>0.2</dd><dt><span>cmot_final_current :</span></dt><dd>0.65</dd><dt><span>cmot_hold :</span></dt><dd>0.06</dd><dt><span>cmot_initial_current :</span></dt><dd>0.18</dd><dt><span>compX_current :</span></dt><dd>0.005</dd><dt><span>compX_current_sg :</span></dt><dd>0</dd><dt><span>compX_final_current :</span></dt><dd>0.002</dd><dt><span>compX_initial_current :</span></dt><dd>0.005</dd><dt><span>compY_current :</span></dt><dd>0</dd><dt><span>compY_current_sg :</span></dt><dd>0</dd><dt><span>compY_final_current :</span></dt><dd>0</dd><dt><span>compY_initial_current :</span></dt><dd>0</dd><dt><span>compZ_current :</span></dt><dd>0</dd><dt><span>compZ_current_sg :</span></dt><dd>0.189</dd><dt><span>compZ_final_current :</span></dt><dd>0.285</dd><dt><span>compZ_initial_current :</span></dt><dd>0</dd><dt><span>default_camera :</span></dt><dd>1</dd><dt><span>evap_1_arm_1_final_pow :</span></dt><dd>0.35</dd><dt><span>evap_1_arm_1_mod_depth_final :</span></dt><dd>0</dd><dt><span>evap_1_arm_1_mod_depth_initial :</span></dt><dd>1.0</dd><dt><span>evap_1_arm_1_mod_ramp_duration :</span></dt><dd>1.15</dd><dt><span>evap_1_arm_1_pow_ramp_duration :</span></dt><dd>1.65</dd><dt><span>evap_1_arm_1_start_pow :</span></dt><dd>7</dd><dt><span>evap_1_arm_2_final_pow :</span></dt><dd>5</dd><dt><span>evap_1_arm_2_ramp_duration :</span></dt><dd>0.5</dd><dt><span>evap_1_arm_2_start_pow :</span></dt><dd>0</dd><dt><span>evap_1_mod_ramp_trunc_value :</span></dt><dd>1</dd><dt><span>evap_1_pow_ramp_trunc_value :</span></dt><dd>1.0</dd><dt><span>evap_1_rate_constant_1 :</span></dt><dd>0.525</dd><dt><span>evap_1_rate_constant_2 :</span></dt><dd>0.51</dd><dt><span>evap_2_arm_1_final_pow :</span></dt><dd>0.037</dd><dt><span>evap_2_arm_1_start_pow :</span></dt><dd>0.35</dd><dt><span>evap_2_arm_2_final_pow :</span></dt><dd>0.09</dd><dt><span>evap_2_arm_2_start_pow :</span></dt><dd>5</dd><dt><span>evap_2_ramp_duration :</span></dt><dd>1.0</dd><dt><span>evap_2_ramp_trunc_value :</span></dt><dd>1.0</dd><dt><span>evap_2_rate_constant_1 :</span></dt><dd>0.37</dd><dt><span>evap_2_rate_constant_2 :</span></dt><dd>0.71</dd><dt><span>evap_3_arm_1_final_pow :</span></dt><dd>0.1038</dd><dt><span>evap_3_arm_1_mod_depth_final :</span></dt><dd>0.43</dd><dt><span>evap_3_arm_1_mod_depth_initial :</span></dt><dd>0</dd><dt><span>evap_3_arm_1_start_pow :</span></dt><dd>0.037</dd><dt><span>evap_3_ramp_duration :</span></dt><dd>0.1</dd><dt><span>evap_3_ramp_trunc_value :</span></dt><dd>1.0</dd><dt><span>evap_3_rate_constant_1 :</span></dt><dd>-0.879</dd><dt><span>evap_3_rate_constant_2 :</span></dt><dd>-0.297</dd><dt><span>final_freq :</span></dt><dd>104</dd><dt><span>gradCoil_current :</span></dt><dd>0.18</dd><dt><span>gradCoil_current_sg :</span></dt><dd>0</dd>
" 2.30e-04 2.55e-04 2.80e-04 3.00e-05 5.50e-05 8.00e-05 1.05e-04 1.30e-04\n",
" 1.55e-04 1.80e-04 2.05e-04 2.30e-04 2.55e-04 2.80e-04 3.00e-05 5.50e-05\n",
" 8.00e-05 1.05e-04 1.30e-04 1.55e-04 1.80e-04 2.05e-04 2.30e-04 2.55e-04\n",
" 2.80e-04]</dd><dt><span>runs :</span></dt><dd>[0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 1. 2. 2.\n",
" 2. 2. 2. 2. 2. 2. 2. 2. 2.]</dd><dt><span>scanAxis :</span></dt><dd>[&#x27;final_amp&#x27;, &#x27;runs&#x27;]</dd><dt><span>scanAxisLength :</span></dt><dd>[33. 33.]</dd></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (final_amp: 11, runs: 3, x: 1200, y: 1920)\n",
"Coordinates:\n",
" * final_amp (final_amp) float64 3e-05 5.5e-05 8e-05 ... 0.000255 0.00028\n",
" * runs (runs) float64 0.0 1.0 2.0\n",
"Dimensions without coordinates: x, y\n",
"Data variables:\n",
" atoms (final_amp, runs, x, y) uint16 98 101 109 106 ... 146 140 140\n",
" background (final_amp, runs, x, y) uint16 99 101 113 103 ... 147 137 137\n",
" dark (final_amp, runs, x, y) uint16 50 51 51 50 50 ... 50 51 50 49 49\n",
" shotNum (final_amp, runs) <U2 '00' '11' '22' '01' ... '10' '21' '32'\n",
" OD (final_amp, runs, x, y) float64 nan nan ... -0.03352 -0.03352\n",
"Attributes: (12/96)\n",
" TOF_free: 0.01\n",
" abs_img_freq: 110.858\n",
" absorption_imaging_flag: True\n",
" backup_data: True\n",
" blink_off_time: nan\n",
" blink_on_time: nan\n",
" ... ...\n",
" z_offset: 0.189\n",
" z_offset_img: 0.189\n",
" final_amp: [3.00e-05 5.50e-05 8.00e-05 1.05e-04 1...\n",
" runs: [0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 1. 1...\n",
" scanAxis: ['final_amp', 'runs']\n",
" scanAxisLength: [33. 33.]"
]
},
"execution_count": 18,
"metadata": {},
"output_type": "execute_result"
}
],
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"source": [
add tool function
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"from ToolFunction.ToolFunction import *\n",
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"\n",
add tool function
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"remove_bad_shots(dataSet['OD'], runs=0)"
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]
},
{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"## Select region of interests"
]
},
{
"cell_type": "code",
first working version
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"execution_count": null,
finish of fitting
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"metadata": {},
"outputs": [],
"source": [
first working version
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"imageAnalyser.center = (529, 962)\n",
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"imageAnalyser.span = (100,100)\n",
"imageAnalyser.fraction = (0.1, 0.1)\n",
"\n",
"# imageAnalyser.center = (890, 1150)\n",
"# imageAnalyser.span = (600,600)\n",
"# imageAnalyser.fraction = (0.1, 0.1)\n",
"\n",
"# imageAnalyser.center = (890, 950)\n",
"# imageAnalyser.span = (100,100)\n",
"# imageAnalyser.fraction = (0.1, 0.1)\n",
"\n",
add tool function
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"dataSet_crop = imageAnalyser.crop_image(dataSet)"
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]
},
{
"cell_type": "code",
first working version
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"execution_count": null,
finish of fitting
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"metadata": {},
first working version
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"outputs": [],
finish reading from hdf5
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"source": [
add tool function
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"dataSet_crop.OD.isel(runs=[0]).plot.pcolormesh(cmap='jet', vmin=0, col=scanAxis[0], row=scanAxis[1])\n",
"# dataSet_crop.OD.plot()"
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]
},
{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"## Remove the background"
finish reading from hdf5
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]
},
{
"cell_type": "code",
first working version
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"execution_count": null,
finish reading from hdf5
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"metadata": {},
"outputs": [],
"source": [
add tool function
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"dataSet_crop['OD'] = dataSet_crop['OD'] + 500"
finish of fitting
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]
},
{
"cell_type": "code",
first working version
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"execution_count": null,
finish of fitting
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"metadata": {},
"outputs": [],
"source": [
add tool function
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"dataSet_crop['OD'] = imageAnalyser.substract_offset(dataSet_crop['OD'])"
finish of fitting
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]
},
{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"# Test Fit"
]
},
{
"cell_type": "code",
first working version
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"execution_count": null,
finish of fitting
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"metadata": {},
"outputs": [],
"source": [
first working version
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"fitAnalyser = FitAnalyser(\"Two Gaussian-2D\", fitDim=2)\n",
finish reading from hdf5
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"\n",
add tool function
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"params = fitAnalyser.guess(dataSet_crop.OD, dask=\"parallelized\")"
finish of fitting
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]
},
{
"cell_type": "code",
first working version
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"execution_count": null,
finish of fitting
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"metadata": {},
"outputs": [],
"source": [
add tool function
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"fitResult = fitAnalyser.fit(dataSet_crop.OD, params, dask=\"parallelized\")"
finish of fitting
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]
},
{
"cell_type": "code",
first working version
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"execution_count": null,
finish of fitting
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"metadata": {},
"outputs": [],
"source": [
first working version
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"fitCurve = fitAnalyser.eval(fitResult, x=np.arange(100), y=np.arange(100)).load()"
finish of fitting
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]
},
{
"cell_type": "code",
first working version
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"execution_count": null,
finish of fitting
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"metadata": {},
first working version
2023-05-04 18:32:17 +02:00
"outputs": [],
finish of fitting
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"source": [
add tool function
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"fitCurve.isel(**{scanAxis[0]:np.arange(30), 'runs':range(dataSet_crop.OD['runs'].size)}).plot.pcolormesh(cmap='jet', vmin=0, col=scanAxis[0], row=scanAxis[1])"
finish of fitting
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]
},
{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"# Get the Ncount"
]
},
{
"cell_type": "code",
first working version
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"execution_count": null,
finish of fitting
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"metadata": {},
"outputs": [],
"source": [
add tool function
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"Ncount = dataSet_crop.OD.sum(dim=(scanAxis[1], 'x', 'y'))"
finish of fitting
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]
},
{
"cell_type": "code",
first working version
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"execution_count": null,
finish of fitting
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"metadata": {},
first working version
2023-05-04 18:32:17 +02:00
"outputs": [],
finish of fitting
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"source": [
first working version
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"fig = plt.figure()\n",
"Ncount.plot(fig=fig)"
finish reading from hdf5
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]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
finish of fitting
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"display_name": "env",
finish reading from hdf5
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"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
first working version
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"version": "3.9.13"
finish reading from hdf5
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},
finish of fitting
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"orig_nbformat": 4,
"vscode": {
"interpreter": {
"hash": "c05913ad4f24fdc6b2418069394dc5835b1981849b107c9ba6df693aafd66650"
}
}
finish reading from hdf5
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},
"nbformat": 4,
"nbformat_minor": 2
}
Reference in New Issue Copy Permalink