analyseScript/DataContainer/MongoDB.py

import pymongo
import xarray_mongodb
import bson
import builtins

import xarray as xr

from ToolFunction.ToolFunction import get_date


npTypeDict = {v: getattr(builtins, k) for k, v in np.sctypeDict.items() if k in vars(builtins)}
npArrayType = type(np.array([0]))


class MongoDB:
    
    def __init__(self, mongoClient, mongoDB, date=None) -> None:
        self.mongoClient = mongoClient
        self.mongoDB = mongoDB
        self.xdb = xarray_mongodb.XarrayMongoDB(mongoDB)
        
        if date is None:
            date= get_date()
        self.set_date(date)
        
    def _convert_numpy_type(self, data):
        for key in data:
            typeKey = type(data[key])
            if typeKey in npTypeDict:
                data[key] = data[key].item()
            elif typeKey == npArrayType:
                data[key] = data[key].tolist()
            else:
                try:
                    data[key] = data[key].item()
                except:
                    pass
        return data
    
    def _break_dataSet(self, dataSet, scanAxis=None):
        
        if scanAxis is None:
            scanAxis = dataSet.attrs['scanAxis'] 
            
        dataArray = dataSet.shotNum
            
        stackedDataArray = dataArray.stack(_scanAxis=tuple(scanAxis))          

        return stackedDataArray
        
    def set_date(self, date):
        date = date.split("/")
        self.year = int(date[0])
        self.month = int(date[1])
        self.day = int(date[2])
        
    def create_global(self, shotNum, dataSet=None, date=None):
        if not date is None:
            self.set_date(date)
        
        data = {
            'year': self.year,
            'month': self.month,
            'day': self.day,
            'shotNum': shotNum,
            'runNum': 0,
            'global_parameters' : {},
        }
        
        global_parameters = self._convert_numpy_type(dataSet.attrs)
        
        if not dataSet is None:
            data['global_parameters'].update(global_parameters)
          
        data = self._convert_numpy_type(data)
        
        if 'scanAxis' in dataSet.attrs:
            
            del data['global_parameters']['scanAxis']
            del data['global_parameters']['scanAxisLength']
            
            scanAxis = dataSet.attrs['scanAxis']
            data['global_parameters'].update(
                {
                    key:0
                    for key in scanAxis
                }
            )
            
            stackedDataArray = self._break_dataSet(dataSet)
            stackedDataArray = stackedDataArray.groupby('_scanAxis')
            
            for i in stackedDataArray:
                
                stackedDataArray_single = i[1]
                
                data.update(
                    {
                        'runNum': int(stackedDataArray_single.item())
                    }
                )
                
                data['global_parameters'].update(
                    {
                        key: stackedDataArray_single[key].item()
                        for key in scanAxis
                    }
                )
                
                if '_id' in data:
                    del data['_id']
                
                self.mongoDB['global'].insert_one(data)
        
        else:
            self.mongoDB['global'].insert_one(data)
    
    def _add_data_normal(self, shotNum, runNum, data):
        
        if runNum is None:
            runNum = 0
        
        filter = {   
            'year': self.year,
            'month': self.month,
            'day': self.day,
            'shotNum': shotNum,
            'runNum': runNum,
        }
        
        self.mongoDB['global'].update_one(filter, {"$set": data}, upsert=False)
        
    def _add_data_xarray_dataArray(self, shotNum, dataArray, scanAxis=None):
        
        if scanAxis is None:
            scanAxis = list(dataArray.coords)
            
        dataArray.attrs = self._convert_numpy_type(dataArray.attrs)
            
        stackedDataArray = dataArray.stack(_scanAxis=tuple(scanAxis))
        stackedDataArray = stackedDataArray.groupby('_scanAxis')
        
        filter = {   
                'year': self.year,
                'month': self.month,
                'day': self.day,
                'shotNum': shotNum,
            }
        
        for i in stackedDataArray:
            
            stackedDataArray_single = i[1].drop('_scanAxis')
            
            global_parameters = {
                'global_parameters.' + key: stackedDataArray_single[key].item()
                for key in scanAxis
            }

            filter.update(global_parameters)
            
            mongoID, _ = self.xdb.put(stackedDataArray_single)
            
            data_label = {
                dataArray.name: 
                    {
                        'name': dataArray.name,
                        'mongoID': mongoID,
                        'engine': 'xarray',
                        'dtype': 'dataArray',
                    }
            }
            
            self.mongoDB['global'].update_one(filter, {"$set": data_label}, upsert=False)
    
    def _add_data_xarray_dataSet(self, shotNum, dataSet, name, scanAxis=None):
        
        if scanAxis is None:
            scanAxis = list(dataSet.coords)
            
        dataSet.attrs = self._convert_numpy_type(dataSet.attrs)
        
        for key in list(dataSet.data_vars):
            dataSet[key].attrs = self._convert_numpy_type(dataSet[key].attrs)
            
        stackedDataSet = dataSet.stack(_scanAxis=tuple(scanAxis))
        stackedDataSet = stackedDataSet.groupby('_scanAxis')
        
        filter = {   
            'year': self.year,
            'month': self.month,
            'day': self.day,
            'shotNum': shotNum,
        }
        
        for i in stackedDataSet:
            
            stackedDataSet_single = i[1].drop('_scanAxis')
            
            global_parameters = {
                'global_parameters.' + key: stackedDataSet_single[key].item()
                for key in scanAxis
            }

            filter.update(global_parameters)
        
            mongoID, _ = self.xdb.put(dataSet)
        
            data_label = {
                name: 
                    {
                        'name': name,
                        'mongoID': mongoID,
                        'engine': 'xarray',
                        'dtype': 'dataSet',
                    }
            }
        
            self.mongoDB['global'].update_one(filter, {"$set": data_label}, upsert=False)
    
    def _add_data_additional(self, shotNum, runNum, data, name):
        
        if runNum is None:
            runNum = 0
        
        filter = {   
            'year': self.year,
            'month': self.month,
            'day': self.day,
            'shotNum': shotNum,
            'runNum': runNum,
        }
        
        mongoID = self.mongoDB.additional.insert_one(data).inserted_id
        
        data_label = {
            name: 
                {
                    'name': name,
                    'mongoID': mongoID,
                    'engine': 'additional',
                    'dtype': 'dict',
                }
        }
        
        self.mongoDB['global'].update_one(filter, {"$set": data_label}, upsert=False)
        
    def add_data(self, shotNum, data, runNum=None, date=None, name=None, engine='normal'):
        if not date is None:
            self.set_date(date)
            
        if engine == 'normal':
            self._add_data_normal(shotNum=shotNum, runNum=runNum, data=data)
        elif engine == 'xarray':
            if isinstance(data, type(xr.Dataset())):
                self._add_data_xarray_dataSet(shotNum=shotNum, data=data, name=name)
            else:
                self._add_data_xarray_dataArray(shotNum=shotNum, data=data, name=name)
        elif engine == 'additional':
            self._add_data_additional(shotNum=shotNum, runNum=runNum, data=data, name=name)
    
    def read_global_single(self, shotNum, runNum, date=None):
        
        if not date is None:
            self.set_date(date)
        
        filter = {   
            'year': self.year,
            'month': self.month,
            'day': self.day,
            'shotNum': shotNum,
            'runNum': runNum,
        }
        
        return self.mongoDB['global'].find_one(filter)
    
    def _load_data_single(self, mongoID, engine):
        if engine == 'xarray':
            return self.xdb.get(mongoID)
        if engine == 'additional':
            return self.mongoDB.additional.find_one({'_id': mongoID})
    
    def load_data_single(self, shotNum=None, runNum=None, globalDict=None, date=None, field=None):
        
        if not date is None:
            self.set_date(date)
        
        if globalDict is None:
            globalDict = self.read_global_single(shotNum=shotNum, runNum=runNum)
        
        if field is None:
            field = globalDict
        
        res = field
        
        for key in field:
            if isinstance(globalDict[key], dict) and ('mongoID' in globalDict[key]):
                mongoID = globalDict[key]['mongoID']
                engine = globalDict[key]['engine']
                
                res.update(
                    {
                        key: self._load_data_single(mongoID=mongoID, engine=engine)
                    }
                )
                
        return res
                
    def load_data(self, shotNum=None, globalDict=None, date=None, field=None):
        pass