You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
26 lines
1.4 KiB
26 lines
1.4 KiB
#!/bin/bash
|
|
#################################################################
|
|
# Script to find which Hydro jobs failed #
|
|
# #
|
|
# Loop over all slurm-<jobID>.out and print the failed jobs #
|
|
# into a list. #
|
|
# #
|
|
# !Make sure you set properly the path to your .out files! #
|
|
# !Check you set the correct name for your .out files! #
|
|
#################################################################
|
|
|
|
string="Finished." ## a succesfully completed hydro job will have this string in the last line of its output
|
|
outfile="testlist.txt" ## file where we will list all the failed jobs
|
|
|
|
if [[ -f "$outfile" ]]; then ## delete previous list of failed jobs
|
|
rm $outfile
|
|
fi
|
|
|
|
for filename in ./slurm-*.out; do ## check all slurm-*.out files in the folder
|
|
line=$(sed -n '$p' $filename) ## takes the last line of each file
|
|
if [[ $line != *$string* ]]; then ## if line does NOT contain the specified string
|
|
newname=$(echo $filename | sed 's#./slurm-##g' | sed 's#.out##g') ## strips the filename to the jobID
|
|
echo "${newname}:: ${line}" ## also print jobID and the last line (reason for failure)
|
|
echo $newname >> $outfile ## append jobID into the file
|
|
fi
|
|
done
|