Repository to share code among the members of the SHM Working Group.
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#!/bin/bash
################################################################## Script to find which Hydro jobs failed ## ## Loop over all slurm-<jobID>.out and print the failed jobs ## into a list. ## ## !Make sure you set properly the path to your .out files! ## !Check you set the correct name for your .out files! ##################################################################
string="Finished." ## a succesfully completed hydro job will have this string in the last line of its outputoutfile="testlist.txt" ## file where we will list all the failed jobs
if [[ -f "$outfile" ]]; then ## delete previous list of failed jobs rm $outfilefi
for filename in ./slurm-*.out; do ## check all slurm-*.out files in the folder line=$(sed -n '$p' $filename) ## takes the last line of each file if [[ $line != *$string* ]]; then ## if line does NOT contain the specified string newname=$(echo $filename | sed 's#./slurm-##g' | sed 's#.out##g') ## strips the filename to the jobID echo "${newname}:: ${line}" ## also print jobID and the last line (reason for failure) echo $newname >> $outfile ## append jobID into the file fidone
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