castaneda
49bc1ec08a
Complete commenting of the code, removed the manual time.sleep, now it relies on waiting for lyse to respond to each shot termination
63 lines
1.8 KiB
Python
63 lines
1.8 KiB
Python
#this file runs the experiment through runmanager
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from datetime import datetime
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import time
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from os import listdir
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#import for labscript
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from labscript.labscript import labscript_init
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from runmanager import remote
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def run_experiment(routine_name, global_var):
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hdf_path = f"C:\\Users\\DyLab\\PrepLab\\Experiments\\NNDy_TestSetup\\{routine_name}"
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#this way it should be loading the routine based on past executions, with the possibility of only changing the global variables
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#it's possible that there could be some issue if the script is changed before running MLOOP
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#without further insights on this, it's recommended to always run the sequence once from runmanager GUI before running NNDy
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labscript_init(hdf_path,
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new = True)
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runmanager_client = remote.Client()
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runmanager_client.set_view_shots(False)
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runmanager_client.set_globals(global_var)
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#print of all the shot globals
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print(f'globals: \n {runmanager_client.get_globals()}')
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#set the path to the shot that will be created
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hdf_path = runmanager_client.get_shot_output_folder()
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print(f'engaged, now waiting')
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runmanager_client.engage()
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#print('engaged')
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#NNDy_ will make sure that the script is put on hold until the shot isn't sent to lyse
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#ask Jianshun for further info
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print('waiting time is over')
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#returns and retrieve the hdf5 file of the shot
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try:
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hdf_files = listdir(hdf_path)
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if len(hdf_files) == 0:
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raise ModuleNotFoundError
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else:
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if len(hdf_files) > 1:
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raise ImportError
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hdf_file = hdf_path + "/" + hdf_files[0]
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except (ModuleNotFoundError, ImportError) as e:
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raise Error(f'An error has occured while importing from hdf output folder: {e}')
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return hdf_file
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